PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000305.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 361aa MW: 39653.6 Da PI: 6.9332

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000305.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.5e-18	203	257	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Pav_sc0000305.1_g100.1.mk 203 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 257 778899***********************************************98 PP
2	HD-ZIP_I/II	126.7	1e-40	203	292	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke Pav_sc0000305.1_g100.1.mk 203 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKEL 286 69******************************************************************************** PP HD-ZIP_I/II 85 eeLreel 91 +eLr +l Pav_sc0000305.1_g100.1.mk 287 QELR-AL 292 *9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAAAKT TGFCMSLSIG PSCDSSTSTS 60 PREADQQLDR NDHQNDDDRS RFSAACGSKS DVPVQLDLLP HTPVAPRSGS HGFPWPTPSD 120 QNVGGGGGSS ENVNRVEEVA AVSSSPTNSG ASSFQMDIGL YSSNYRGSGG KRSHSPEAEG 180 DEGERQSNSR ASDEDDINGS NTRKKLRLSK EQSAFLEESF KEHHTLNPKQ KLALAKQLNL 240 RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLHKELQELR ALKTHHHSNP 300 FYMQSPATTL TMCPSCERIA TTNTTTSTTN KTTTKAQAEA DGFPRFYPFC QPQSHHSSAA 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAAAKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDR NDHQNDDDRS RFSAACGSKS DVPVQLDLLP HTPVAPRSGS HGFPWPTPSD  120
QNVGGGGGSS ENVNRVEEVA AVSSSPTNSG ASSFQMDIGL YSSNYRGSGG KRSHSPEAEG  180
DEGERQSNSR ASDEDDINGS NTRKKLRLSK EQSAFLEESF KEHHTLNPKQ KLALAKQLNL  240
RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLHKELQELR ALKTHHHSNP  300
FYMQSPATTL TMCPSCERIA TTNTTTSTTN KTTTKAQAEA DGFPRFYPFC QPQSHHSSAA  360
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	208	TRKKLRL
2	252	260	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	9e-68	HD-ZIP family protein