PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000293.1_g380.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 270aa MW: 29737 Da PI: 6.5699

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000293.1_g380.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.9	8e-15	215	250	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ k+ Pav_sc0000293.1_g380.1.mk 215 CRHCGINEkcTPMMRRGPDGPRTLCNACGLMWANKN 250 ********************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MIDEPMHMND DLHLQYMQEH EHHHGLDHIS NGNGVADDHD NGSGGAELVQ ADVPSDPMNL 60 SDTHDGMMDH GPENGDQLTL SFQGQVFVFD SVSPEKVQAV LLLLGGREVP PSMPAVPVTT 120 QHNNRGLTST PQRLSVPQRL ASLIRFREKR KERNFDKKIR YTVRKEVALR MQRKKGQFTS 180 SKPNNDDSAS AVTSSGSNES WSQDGNGSQH QEAVCRHCGI NEKCTPMMRR GPDGPRTLCN 240 ACGLMWANKN GNLAADQVFR ITGSGSESSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	1e-114	GATA family protein