PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000293.1_g290.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 86aa MW: 9852.91 Da PI: 4.2484 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.3 | 1.6e-11 | 1 | 41 | 61 | 101 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++yeA +r++dP+yG+v+++++lqq+l q+++e+a++k+++ Pav_sc0000293.1_g290.1.mk 1 MFYEASVRVEDPIYGCVKIVSQLQQDLFQAQSEMAKTKAQI 41 57**********************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence |
MFYEASVRVE DPIYGCVKIV SQLQQDLFQA QSEMAKTKAQ IAFYNAQQQL NQQQQNMVDG 60 VGDNYQQDLH SESSRLGLDD HFYCLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 8e-10 | LBD family protein |