PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000259.1_g550.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 279aa    MW: 29686.9 Da    PI: 5.427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000259.1_g550.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10160207455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Pav_sc0000259.1_g550.1.mk 160 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                                8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDPPLINESS FSAANPSAYS LAEIWPFSGE PGGSGGGLGL RMGSLGGLGD SSVNIDGSLE  60
ESTVTEQSGG GGGRKRRDVS PEDESSKLVS TSSASGLKDS SGKRMKLAGS QNENGGSKAE  120
VEESSAAGDN KPAEQSTKPS EPPKQDFIHV RARRGQATDS HSLAERARRE KISERMKLLQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRMNMNPTI EAFPSKDLGA  240
QPFDGAGLLF GSHTPREYAQ GSHPEWLHMQ VGSSFERAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.16e-90bHLH family protein