PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000254.1_g1220.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 349aa    MW: 38339 Da    PI: 8.0007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000254.1_g1220.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1378122147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pav_sc0000254.1_g1220.1.mk  78 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 122
                                 789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MVSVNPNPAQ GFYLFDPMNM GLPGLNSIPP PTATATTASA ATSTTACTAS STPTNATSLL  60
AEDQSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ  120
KYFLKVQKKG TSEHVPPPRP KRKATHPYPQ KAPKSAAVVS QVAGQFQSSS ALLEHGYVYQ  180
PDSSFALGTP VTSATLSSWS YNSVPPVNVS QITKDDGRLA GPTVAHNSCY SSSNESNPTT  240
WQMSEKVDRA DPDQPHRVLP DFAQVYKFIG SVFDPNATSH LERLKELDPI NLETVLLLMR  300
NLSLNLTSPE FEDHRRLLSS YDADSEKAKS DSNCNFSCIG KSENAILSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.12e-99MYB_related family protein