PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000220.1_g950.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 263aa    MW: 28321.8 Da    PI: 4.5081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000220.1_g950.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-081440127
                               TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                               +g+W++eEd++l+ +++ +G g+W++ 
  Pav_sc0000220.1_g950.1.mk 14 KGPWSPEEDQKLLTYIEHHGHGSWRAL 40
                               79**********************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGRSPCCEKV GLKKGPWSPE EDQKLLTYIE HHGHGSWRAL PPKAAEARLV RESKLQVIST  60
TNPNQLLISS SSDATHQGHV INKAPPALPC LDVLRAWQGT WSTKPTVRNV NSTIISGGSM  120
MSMDDLESPT STLNFPHINA LNPPMQNGVN INGINENPVV PSEVLQDNVN VIYGCMDACA  180
ATPAWFVEEG TFNSGNDEEV GNVIMPAGVS NIMMEGFTDV LVYNSSLAGE ISDNAGGNFE  240
ENKSYWDSIL NLVNASPSGS PVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-23MYB family protein