PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000220.1_g1760.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32778.6 Da    PI: 5.9284
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000220.1_g1760.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.5e-1881134356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Pav_sc0000220.1_g1760.1.mk  81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134
                                 456899***********************************************9 PP
2HD-ZIP_I/II129.81.1e-4180170191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++n++L+++
  Pav_sc0000220.1_g1760.1.mk  80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKADNDALQAQ 162
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 +++L++e+
  Pav_sc0000220.1_g1760.1.mk 163 NQKLQAEI 170
                                 *****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MTGNGMAFFS ANFMLQTPHD HDDHQPPTSL NPMLPSCTPQ DFHGVASFLG KRSVSFSGIE  60
LGEETHGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE AIKADNDALQ AQNQKLQAEI LALKSREPAE  180
SINLNKETEG SCSNRSENNS DIKLDISRTP AIDSPQSTHP NPTSRTLFSS SLIRPSSGVA  240
QLFQTTSRPE VIQCQKIDQM VKEESLTNMF CGIDDQSAGF WPWLETHQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-120HD-ZIP family protein