PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000220.1_g1480.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 388aa MW: 42797.4 Da PI: 6.3162

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000220.1_g1480.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.4	2.8e-19	19	107	1	85
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknra 77 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLp+ + + ++ + ++ kk+++++ ++ra Pav_sc0000220.1_g1480.1.mk 19 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPSnfflnrN-LVHARDSWAICRIFKKTNSSHAHQRA 99 579*************************.89*************54666532.22455667778888888888888888 PP NAM 78 tksgyWka 85 ++ W + Pav_sc0000220.1_g1480.1.mk 100 LSHHSWVS 107 88888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MDERSDVNII GGDKMDEVML PGFRFHPTDE ELVGFYLKRK IQQRPLSIEL IKQLDIYKFD 60 PWDLPSNFFL NRNLVHARDS WAICRIFKKT NSSHAHQRAL SHHSWVSALP ETNSCDDHML 120 GSKAAHSATH HHHQHEFSSG SMSLTSKTNS ATQFSGNNNN NDIQISSTTS SMSPLDIYTN 180 SYKAMNPLMM GCNIKLPYQY FPISNSNGDY FPSTPSFAFS SSPLETPSGP VAKCAVDVSS 240 LLLNMSSSML GDYNGSNSIH KASAESTNFE FSTTTGSQDQ CNGGFSSMTL PHHHEVMQGN 300 NNMGNGHDTV VGLIKNNISN VNSNVTEDAD DQRWETSVRS NIGFPLMMSN SLPLPLNIGG 360 GGGDAWKSSL TWESSPCPSE MSTTRCYT

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MDERSDVNII GGDKMDEVML PGFRFHPTDE ELVGFYLKRK IQQRPLSIEL IKQLDIYKFD  60
PWDLPSNFFL NRNLVHARDS WAICRIFKKT NSSHAHQRAL SHHSWVSALP ETNSCDDHML  120
GSKAAHSATH HHHQHEFSSG SMSLTSKTNS ATQFSGNNNN NDIQISSTTS SMSPLDIYTN  180
SYKAMNPLMM GCNIKLPYQY FPISNSNGDY FPSTPSFAFS SSPLETPSGP VAKCAVDVSS  240
LLLNMSSSML GDYNGSNSIH KASAESTNFE FSTTTGSQDQ CNGGFSSMTL PHHHEVMQGN  300
NNMGNGHDTV VGLIKNNISN VNSNVTEDAD DQRWETSVRS NIGFPLMMSN SLPLPLNIGG  360
GGGDAWKSSL TWESSPCPSE MSTTRCYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	5e-27	NAC family protein