PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000212.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 363aa MW: 42706.7 Da PI: 4.5959

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000212.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.5e-14	124	208	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt++ v +L+e+ ++ +l+r++l+ +W ev++k+ ++ ++er+ +qC++ ++ l+++ykk+ke ++ +ss+++yf++ Pav_sc0000212.1_g030.1.mk 124 WTEHAVFVLLEVWGDRFLQLGRKSLRSEDWHEVAEKVsEASKIERTDTQCRSMLDMLKRKYKKEKEKVEEM-GLNSSKWAYFKK 206 ***********************************777899*******************99996.89999***** PP trihelix 85 le 86 ++ Pav_sc0000212.1_g030.1.mk 207 MD 208 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDDMDDDARY HSKAYSLNHH NSSGRRKINI RNTQYSRPIA NRYAEEDDDE LDEFDEGNGR 60 RDHDEEEEEE EEHPRGLHRN FEADDGFERH TKKRKVKNLE SSYEFAPRGR VPYRDPSPRG 120 EEDWTEHAVF VLLEVWGDRF LQLGRKSLRS EDWHEVAEKV SEASKIERTD TQCRSMLDML 180 KRKYKKEKEK VEEMGLNSSK WAYFKKMDML MASSLRQECG LACGVDSGEY VFMNTRVYLE 240 RSNGFDEMRD SPGESETDDD QDGNDDQDAF PPRMGMRGGD RGEEGSSYRV LADSIHKFGE 300 IYEKIESSKR QQMRELEKMR KDFHKELEFQ KKQILERAQV EIAKIQEADD DDETDVSAED 360 LSE

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDDMDDDARY HSKAYSLNHH NSSGRRKINI RNTQYSRPIA NRYAEEDDDE LDEFDEGNGR  60
RDHDEEEEEE EEHPRGLHRN FEADDGFERH TKKRKVKNLE SSYEFAPRGR VPYRDPSPRG  120
EEDWTEHAVF VLLEVWGDRF LQLGRKSLRS EDWHEVAEKV SEASKIERTD TQCRSMLDML  180
KRKYKKEKEK VEEMGLNSSK WAYFKKMDML MASSLRQECG LACGVDSGEY VFMNTRVYLE  240
RSNGFDEMRD SPGESETDDD QDGNDDQDAF PPRMGMRGGD RGEEGSSYRV LADSIHKFGE  300
IYEKIESSKR QQMRELEKMR KDFHKELEFQ KKQILERAQV EIAKIQEADD DDETDVSAED  360
LSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	189	KRKYKKEKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-86	Trihelix family protein