PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000200.1_g440.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 566aa MW: 66163.6 Da PI: 8.2948

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000200.1_g440.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.4	1.7e-16	42	128	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y++YA++vGF ++k++skk + ge + t+ Cs++g ++ ++ ++ ++ +++Cka+l+ dg+w+v++++l Pav_sc0000200.1_g440.1.br 42 DYYKKYANRVGFPMKKRSSKKG-DCGELKYVTLSCSRSGIPQGIVSN---VLKPYPSIKCNCKAQLRAGICLDGRWKVNSVKLV 121 69************998887.8889***********99888...8999************************** PP FAR1 85 HnHelap 91 HnH l+p Pav_sc0000200.1_g440.1.br 122 HNHGLNP 128 *9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MSEENDEVEI GEIGLENTMS LEETTQEPKV NMIFNTADEV LDYYKKYANR VGFPMKKRSS 60 KKGDCGELKY VTLSCSRSGI PQGIVSNVLK PYPSIKCNCK AQLRAGICLD GRWKVNSVKL 120 VHNHGLNPDD ARYFRMNRAI SSYMKRKIEV NDRAGIRVNK NYNSMVVEAG GHENMSFMEK 180 DYESGRLRNV FWADSRSRAA YEEFGDAITF DTTYLTNKYD MPFAPFVGVN HHGHSILLGC 240 GLISSEDTEI FVWLFKVWLA CMSRHAPCGI ITYQDRAMKN AIEIVFPNTR HRWCLWHIMK 300 KLHEKLKSYK HYESIKFTLE NIVYDSLTNI EFEDRWKEMI EKYELQSNDW LRGLYDERRR 360 WVPSFVKGSF WAGMSTTQRS ESMNAFFDDH VNSKTTLKQF VEQYENALMT KVEKENQADY 420 KSSSADIQCS THYFMEKQAQ GVYTIAKFKE FQDELTGKMY CEVVDTKEDG VFLKYQISED 480 MIIAGKKKSV NFTVIFHEFD SEVKCNCSKF EFKGILCRHA IYVLIKHKMD LIPDKYILRR 540 WRKDVTRRHT KIKISYNESN ATLEAH

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MSEENDEVEI GEIGLENTMS LEETTQEPKV NMIFNTADEV LDYYKKYANR VGFPMKKRSS  60
KKGDCGELKY VTLSCSRSGI PQGIVSNVLK PYPSIKCNCK AQLRAGICLD GRWKVNSVKL  120
VHNHGLNPDD ARYFRMNRAI SSYMKRKIEV NDRAGIRVNK NYNSMVVEAG GHENMSFMEK  180
DYESGRLRNV FWADSRSRAA YEEFGDAITF DTTYLTNKYD MPFAPFVGVN HHGHSILLGC  240
GLISSEDTEI FVWLFKVWLA CMSRHAPCGI ITYQDRAMKN AIEIVFPNTR HRWCLWHIMK  300
KLHEKLKSYK HYESIKFTLE NIVYDSLTNI EFEDRWKEMI EKYELQSNDW LRGLYDERRR  360
WVPSFVKGSF WAGMSTTQRS ESMNAFFDDH VNSKTTLKQF VEQYENALMT KVEKENQADY  420
KSSSADIQCS THYFMEKQAQ GVYTIAKFKE FQDELTGKMY CEVVDTKEDG VFLKYQISED  480
MIIAGKKKSV NFTVIFHEFD SEVKCNCSKF EFKGILCRHA IYVLIKHKMD LIPDKYILRR  540
WRKDVTRRHT KIKISYNESN ATLEAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1 family protein