PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000175.1_g570.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 367aa MW: 43444.4 Da PI: 7.9483

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000175.1_g570.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.8e-19	40	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn+YAk++ Fsvr+sk+kk+k++ge++++++vC keg+ +e+ +k + + +r+r + + +Ckakl+v + +++v+ Pav_sc0000175.1_g570.1.br 40 EFYNDYAKDARFSVRISKEKKKKETGEVVWKRYVCFKEGEIDETWRKkkdseSIQIERERGNVHENCKAKLTVVYD-GFNFVVK 122 6************************************98876666445556677789999*******999.999 PP FAR1 80 kleleHnHela 90 ++ +eH+H+la Pav_sc0000175.1_g570.1.br 123 TFIEEHTHPLA 133 *******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MANALDEWMS SKDEFYIPQV RDDKKPKAWL TFKSLDETYE FYNDYAKDAR FSVRISKEKK 60 KKETGEVVWK RYVCFKEGEI DETWRKKKDS ESIQIERERG NVHENCKAKL TVVYDGFNFV 120 VKTFIEEHTH PLATPSRVHL LRSHRGVSDT KIKLVKKFSN VNIPLYQQFK LLETQAGGHE 180 SVGFIERDLR NFERDEREKI KGHDAEMLYE YFKSEEDKDS DFFFKFETDN NNRMTRCFWV 240 DSVARKAYTH FGDVVVFDTT YNTNRYAMIF ALLVGVNHHG QTTIFGCGFL SNETFDSFVW 300 LLETWLEAMK VPPIVIITDQ DQAMTKAIAQ VLPNTFHRYC VWHILNKFQD MGAGSVRKKN 360 RFWVFNF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MANALDEWMS SKDEFYIPQV RDDKKPKAWL TFKSLDETYE FYNDYAKDAR FSVRISKEKK  60
KKETGEVVWK RYVCFKEGEI DETWRKKKDS ESIQIERERG NVHENCKAKL TVVYDGFNFV  120
VKTFIEEHTH PLATPSRVHL LRSHRGVSDT KIKLVKKFSN VNIPLYQQFK LLETQAGGHE  180
SVGFIERDLR NFERDEREKI KGHDAEMLYE YFKSEEDKDS DFFFKFETDN NNRMTRCFWV  240
DSVARKAYTH FGDVVVFDTT YNTNRYAMIF ALLVGVNHHG QTTIFGCGFL SNETFDSFVW  300
LLETWLEAMK VPPIVIITDQ DQAMTKAIAQ VLPNTFHRYC VWHILNKFQD MGAGSVRKKN  360
RFWVFNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	88	KKKKETGEVVWKRYVCFKEGEIDETWRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-68	FAR1 family protein