PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000143.1_g580.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-X1

Protein Properties

Length: 1511aa MW: 170197 Da PI: 8.1782

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000143.1_g580.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.2	1.1e-05	1038	1057	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ Pav_sc0000143.1_g580.1.mk 1038 CGRHACKRRCCDGDCPPCSE 1057 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1511 aa Download sequence
MCKVKVNPTD WGRAPTPFPT TVLELLHSPT QSLKDRPTHP QILRLRIPIP NEPIPMSKQT 60 YRVCFCFRRR FKLAISEAPP EIKDLFDQYS ENDIMTVDHL HRFLTEVQKE EKATKEEAQA 120 TIDHCLRELK HLNIFHRKVL NLEAFFKYLF GDINPPILPS IGVHHDMSAP LSHYFIYTGH 180 NSYLTGNQLS SDCSDVPIIQ ALHRGVRVIE LDIWPNSTKD DVDVLHGGTL TTPVELIKCL 240 KSIKEHAFVA SEYPVVITLE DHLTPDLQAK VAQLVTQTFG DVLFSPGSEC LKDFPSPESL 300 KKRIIISTKP PQEYLEAKDA VKSENDPKSG KTQVDEEAWG QEVPDLKGAN VVDDKDELDE 360 EDSNGEEDND KSPQHLAPEY KRLIAIHAGK PKGGLVECLK VDPDKVRRLS LSEQQLEKAS 420 ETYGKEIVRF TQRNILRVYP KGIRVDSSNY NPMIGWSHGA QMVAFNMQGY GRSLWVMQGM 480 FRANGGCGYV KKPDFLLKTG PHNEVFDPKY KLPVKTTLKV KVYMGEGWYY DFKHTHFDAY 540 SPPDFYARVR IAGVAADSVM KKTKTLEDDW IPAWDEEFEF PLTVPELAVL RIEVHEYDMS 600 EKDDFGGQTC LPVSELRKGI RAVPLHSLCR ALQNRSRSLL HTEIPKMSSP HSGSDTDSDQ 660 SQSGSEPVRH SDLSDSIFRS YLEFTGRSSA TNTDLSKIQS FLTSSSSGAL SCLICLERIR 720 PAHPTWSCTS VCFSVFHLIC IQSWARQASD SSALRASTRL PISAQKAAEV SLWNCPKCRV 780 EYPQSQIPKT YFCFCGKLEN PPSDDPWVLP HSCGEVCNRP LNHSCGHHCL LLCHPGPCPS 840 CPKLVKARCF CGSVQDVRRC GFKNFSCNNV CNKVLDCRVH CCSEICHQGP CPPCPVRAVY 900 RCQCGKREEE RQCCERLDFR CEEPCEKVLG CGQHKCSKGC HSEECGPCPF QGKRTCPCGK 960 TVHEGLSCKA SVPLCGATCS KMLSCGYHRC PERCHRGQCI VTCRTVVIKS CRCGSLKKEV 1020 PCHQDLTCER KCQRQRDCGR HACKRRCCDG DCPPCSEVCG RKLRCKNHKC PSPCHRGACA 1080 PCPVMVTIAC LCGETHFEVP CGIEMDQKPP RCPKPCPITL LCRHGKNRKP HKCHYGACPP 1140 CRLLCEEEYP CGHKCKLRCH GPRPPPNPEF TLKPKKKKSL HQSECTPGSP CPPCPEHVWR 1200 SCVGQHVGVE RMMVCSDKTL FSCENLCGNP LPCGNHFCTK TCHPLRNQSL PSVQQARSEP 1260 CEKCHIPCEK EREPACSHPC PLSCHPGDCP SCKVLVKRSC HCGSMVHVFE CIYYNSLSEK 1320 EQMAARSCRG PCHRKLPYCN HLCPELCHPG QCSSPEKCSK KVTVRCACQS LKKEWLCHDV 1380 QAAYRNAGSD PKDISKNQFG HALIPCNSNC KSKLKVIDSE LQLRRPKTVE VKEPDTDKHG 1440 PKRKKRRERV QEVTQISTLQ KIVSNVKRFL LLVTVLLVLV AVSYYGYKGL LWLSDWMNEV 1500 EVKRQGRYPR I

Sequence ? help Back to Top

Protein Sequence Length: 1511 aa Download sequence

MCKVKVNPTD WGRAPTPFPT TVLELLHSPT QSLKDRPTHP QILRLRIPIP NEPIPMSKQT  60
YRVCFCFRRR FKLAISEAPP EIKDLFDQYS ENDIMTVDHL HRFLTEVQKE EKATKEEAQA  120
TIDHCLRELK HLNIFHRKVL NLEAFFKYLF GDINPPILPS IGVHHDMSAP LSHYFIYTGH  180
NSYLTGNQLS SDCSDVPIIQ ALHRGVRVIE LDIWPNSTKD DVDVLHGGTL TTPVELIKCL  240
KSIKEHAFVA SEYPVVITLE DHLTPDLQAK VAQLVTQTFG DVLFSPGSEC LKDFPSPESL  300
KKRIIISTKP PQEYLEAKDA VKSENDPKSG KTQVDEEAWG QEVPDLKGAN VVDDKDELDE  360
EDSNGEEDND KSPQHLAPEY KRLIAIHAGK PKGGLVECLK VDPDKVRRLS LSEQQLEKAS  420
ETYGKEIVRF TQRNILRVYP KGIRVDSSNY NPMIGWSHGA QMVAFNMQGY GRSLWVMQGM  480
FRANGGCGYV KKPDFLLKTG PHNEVFDPKY KLPVKTTLKV KVYMGEGWYY DFKHTHFDAY  540
SPPDFYARVR IAGVAADSVM KKTKTLEDDW IPAWDEEFEF PLTVPELAVL RIEVHEYDMS  600
EKDDFGGQTC LPVSELRKGI RAVPLHSLCR ALQNRSRSLL HTEIPKMSSP HSGSDTDSDQ  660
SQSGSEPVRH SDLSDSIFRS YLEFTGRSSA TNTDLSKIQS FLTSSSSGAL SCLICLERIR  720
PAHPTWSCTS VCFSVFHLIC IQSWARQASD SSALRASTRL PISAQKAAEV SLWNCPKCRV  780
EYPQSQIPKT YFCFCGKLEN PPSDDPWVLP HSCGEVCNRP LNHSCGHHCL LLCHPGPCPS  840
CPKLVKARCF CGSVQDVRRC GFKNFSCNNV CNKVLDCRVH CCSEICHQGP CPPCPVRAVY  900
RCQCGKREEE RQCCERLDFR CEEPCEKVLG CGQHKCSKGC HSEECGPCPF QGKRTCPCGK  960
TVHEGLSCKA SVPLCGATCS KMLSCGYHRC PERCHRGQCI VTCRTVVIKS CRCGSLKKEV  1020
PCHQDLTCER KCQRQRDCGR HACKRRCCDG DCPPCSEVCG RKLRCKNHKC PSPCHRGACA  1080
PCPVMVTIAC LCGETHFEVP CGIEMDQKPP RCPKPCPITL LCRHGKNRKP HKCHYGACPP  1140
CRLLCEEEYP CGHKCKLRCH GPRPPPNPEF TLKPKKKKSL HQSECTPGSP CPPCPEHVWR  1200
SCVGQHVGVE RMMVCSDKTL FSCENLCGNP LPCGNHFCTK TCHPLRNQSL PSVQQARSEP  1260
CEKCHIPCEK EREPACSHPC PLSCHPGDCP SCKVLVKRSC HCGSMVHVFE CIYYNSLSEK  1320
EQMAARSCRG PCHRKLPYCN HLCPELCHPG QCSSPEKCSK KVTVRCACQS LKKEWLCHDV  1380
QAAYRNAGSD PKDISKNQFG HALIPCNSNC KSKLKVIDSE LQLRRPKTVE VKEPDTDKHG  1440
PKRKKRRERV QEVTQISTLQ KIVSNVKRFL LLVTVLLVLV AVSYYGYKGL LWLSDWMNEV  1500
EVKRQGRYPR I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1441	1447	PKRKKRR
2	1443	1449	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein