PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000143.1_g250.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20411.2 Da PI: 7.6779 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 5.1e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+l+rkC++ C++apyf ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq Pav_sc0000143.1_g250.1.mk 14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILTEVPEERREDTVNSLAYEAEARLRDPVYGCIGAIAMLQ 97 6*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +++ +l+++la ++++ Pav_sc0000143.1_g250.1.mk 98 RKMIELQHDLAIARAR 113 **********999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MNMKGSHEPR STSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILT 60 EVPEERREDT VNSLAYEAEA RLRDPVYGCI GAIAMLQRKM IELQHDLAIA RARLACYASN 120 SLSSSSPTAS ASSCYGVLDD QLSEAALSAV GFPACSGFSN SFMSQSAPEL NSHSQHGQTS 180 DFSCAPYIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 4e-62 | LBD family protein |