PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000130.1_g670.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 944aa MW: 106356 Da PI: 6.2782 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.2 | 3.7e-87 | 579 | 942 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 + Ll++Ae v +++e+a++lL r + +as +g+p+qR+++yf+eAL++r+ r++ ++ ++ + + s + s++ + +++ Pav_sc0000130.1_g670.1.mk 579 AHILLAAAEKVGYQQFERANRLLLRCEWIASFKGNPIQRVVFYFAEALRERIERETGSIPSKAEEMSISGHGLSTN-LTYLAYH 661 699***************************************************7777766665555554334444.4445699 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakf 168 + P++ + ++t qaI e+v+ e++vH iD++i G+QW L+++La+R+e p l iT+vg + k+++eetg+rL+++ Pav_sc0000130.1_g670.1.mk 662 QEVPFHSVMQFTGIQAIIESVALESKVHLIDLEIRSGVQWTGLMESLAEREECPVeLLTITAVGV---EGKQKIEETGKRLTSV 742 999************************************************7666489*******...589************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 Ae+l++pf+f++++++++ed++ + ++v+ +Ea+aV l l ++ +++ +le+ +++++++l P ++vv+e ea+hns+s Pav_sc0000130.1_g670.1.mk 743 AESLNIPFQFKAVIVSAMEDIKDQLFDVEDDEAVAVYAPLILRTMISRPSCLEN----LMRVMRNLTPCIMVVIEVEANHNSPS 822 **********************************************88888888....************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 F++rf++al +ysa+fd+le+ + ++ee +++ + ++++i+n+va+eg+er++r + Wr+ + ++ + ++++s+ q Pav_sc0000130.1_g670.1.mk 823 FVNRFIDALFFYSAFFDCLETCM--KQEEYRVLTEGSFREAIRNIVAAEGSERVARSVKIDVWRAFFARFRMVEMNFSNASLYQ 904 *********************96..556666666666*********************************************** PP GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+l+ ++++ +++ + ++l+ gWk+ p+ svSaW+ Pav_sc0000130.1_g670.1.mk 905 ASLVAKRFGCPSCTLDRNGKCLTVGWKETPIHSVSAWK 942 *********999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 944 aa Download sequence |
MSFQNYLDWE QRAKKLLMSL TSFLKQPFHT LTITLLSLLL PLSFLLLARL SCANYLLSLS 60 FAPLHPDPNY STTTTSSTLF SLFRYATPSL LYILVSIVST AALIHCLTGK ITIITEFPTP 120 IFRPRLYTAW IFLCTLQVCV GLGIEGSIAA GINGATFGSV DERICLLSRA IFFVGLHETM 180 LHWCRVVVKP VVDDTVFGAA RGEKWVERVA VAASFGCLWW WRLRDEMESL VVVAKAKREL 240 SMGIGVADFV GWWLYYLTVT IGMVRVVKGV MWLSMVLLCR RRSGGGNFAN SCAEDHDLQD 300 NKNMANAFFP FTPFDFGVLG GLTPQLEDYE KDQEVAFKVK PGHLFAIEEL GLGEMDSALS 360 SEHGFYQEDS KAKKGGLSSH FSKDPKPTYS LSDNFNFDIV SSEHVFHQSN KSEKGLPHLS 420 KDQDHRHYQQ HHHYQQQQPK SNYSILDDFN FDSVFPPAQP IQDGTHQLTY NQIGGSDIAE 480 TNKHLPHQSS LAVLELLNSY GSAFKKLRGE RTSSDTGNEA EASSYVGQQK LSTEEIMRVA 540 GARYVQFSNQ GYDDFYPLHP FGYALSGLSE EETKDAELAH ILLAAAEKVG YQQFERANRL 600 LLRCEWIASF KGNPIQRVVF YFAEALRERI ERETGSIPSK AEEMSISGHG LSTNLTYLAY 660 HQEVPFHSVM QFTGIQAIIE SVALESKVHL IDLEIRSGVQ WTGLMESLAE REECPVELLT 720 ITAVGVEGKQ KIEETGKRLT SVAESLNIPF QFKAVIVSAM EDIKDQLFDV EDDEAVAVYA 780 PLILRTMISR PSCLENLMRV MRNLTPCIMV VIEVEANHNS PSFVNRFIDA LFFYSAFFDC 840 LETCMKQEEY RVLTEGSFRE AIRNIVAAEG SERVARSVKI DVWRAFFARF RMVEMNFSNA 900 SLYQASLVAK RFGCPSCTLD RNGKCLTVGW KETPIHSVSA WKFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 4e-49 | GRAS family protein |