PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000129.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 341aa    MW: 38000.7 Da    PI: 8.5931
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000129.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32184240158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Pav_sc0000129.1_g540.1.mk 184 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRVRGSGGRF 240
                                57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MPYQIPKDTL IELSMPTQNL DKKIFNQSSV QSMPLYTTNC MSWNPIEREI PHSLSKDASF  60
KVEFTPQVHH DAKHLGLQLL PDQGSSSTTQ TISQSQDRCN SSESGEDEIC GKGVEGQMKP  120
VYLLNNLDLM SNPSQLGYGN LVGRVPYPYA DPYFSGFLAA YGPQAMPQMI APTRVPLPHD  180
LAEDGPIYVN AKQYHGILRR RQSRAKLEAQ NKLLKARKPY LHESRHLHAL NRVRGSGGRF  240
LSTKRLQQSD QNPSSSTHDV PDSVNLHQKD TQDTESHHLG SSEFVTAVAT HSDIASVSHT  300
NDIFRQQDRR FSGIPSHMGG AMQFRGGIMR AGTQHCASVV R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-50NF-YA family protein