PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000129.1_g280.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 295aa    MW: 31958.8 Da    PI: 9.0714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000129.1_g280.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-13556147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                               +++WT eE+e l  +vk++G+g Wk I +          R+  ++k++w++ 
  Pav_sc0000129.1_g280.1.mk  5 KQKWTSEEEEALRAGVKKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                               79***********************************9************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV KKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSG  60
MNPRDKSRAP KAKVNADAPA ASVSVSQISA AASAKRDAPA AATATARRDA PVVTPARRDA  120
PAATPARRDA PAATPVRHDA PAAPVADDSS TGLSDAKNAP AYDAMIFEAL STSTGPNGLD  180
SGAIASFIEQ RNEIPPNFRR SLSNRLRRLV HQEKLEKIQN CYRTKAPKQK DIHPTEEWAV  240
AAYKIADAEN KSFVAAEAVK ESERLSEMAE EAQSTLQFAA EILEKCSEGE VLLMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-26MYB_related family protein