PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000113.1_g650.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 332aa    MW: 37661.5 Da    PI: 7.1534
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000113.1_g650.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.51.8e-3184178291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                fYn+YA+++GFs+r+s s++s+r+g i++r fvC +eg+r +++ k     + + +r+r+etr+gCka+l+vk +++gkw+v+ 
  Pav_sc0000113.1_g650.1.mk  84 FYNSYARRTGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVDKHGKpgsdrEGRVKRPRPETRVGCKAMLVVKIQDSGKWVVSA 167
                                ******************************************999999988888899*************************** PP

                       FAR1  81 leleHnHelap 91 
                                +++eHnHel+p
  Pav_sc0000113.1_g650.1.mk 168 FVKEHNHELVP 178
                                *********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MEFEPLSLGN DVIEFDMMGL GDIDHSVDHD DLLHDSPPTA IPTPSVSDVV GSAAIFEPYI  60
PEGDTNLEPY EGMEFESEEA SKAFYNSYAR RTGFSTRVSM SRRSRRDGAI IQRSFVCARE  120
GFRVDKHGKP GSDREGRVKR PRPETRVGCK AMLVVKIQDS GKWVVSAFVK EHNHELVPPE  180
RVHCLRSHRH VSVRYNNLRH EALKYVDEGV KTVEIYNVSI DALEEAANRV SLAKKNDGRL  240
AIVSRTGRDD RFHLGSRSNT IGDHKWGFET LSADEQDKKI QKLERQLDRA QRKCELYRAS  300
LLSVLKDIEE QKLQLSVKVE NIKLGMKESS IV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-51FAR1 family protein