PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000110.1_g160.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 149aa    MW: 17475.9 Da    PI: 9.2301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000110.1_g160.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09343847
                               HHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  8 EdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                               Ed+ l+++v+++G g   W+++ar +g +Rt+ +c+s w  +
  Pav_sc0000110.1_g160.1.br  3 EDQDLIEVVERYGYGthIWEAVARFLG-TRTRRECQSLWAEW 43
                               9**************************.*********99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MVEDQDLIEV VERYGYGTHI WEAVARFLGT RTRRECQSLW AEWLDPQIRR DEWSEMKDTK  60
LRELSRIMPA QWQTISEIFN SSRTAMACQL RHAFILENPQ KIFGQEGPSS FTKKAGPSQR  120
TNNQPKSGEK KLFLKRSTPR IKIDLGFDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.12e-15MYB family protein