PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000108.1_g800.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 512aa MW: 55169.1 Da PI: 4.415

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000108.1_g800.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	80	3.6e-25	42	126	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SF gF+kv+ ++ weF+++ Pav_sc0000108.1_g800.1.mk 42 FLSKTYDMVDDPATDQVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSF-------GFRKVDPDR---------WEFANEG 109 9******************999***********************9.......9*999.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+k+ll++i+r+k Pav_sc0000108.1_g800.1.mk 110 FLRGQKHLLKSINRRKP 126 ************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MGGANNNGDE ASMAGGGGGG AQQAGLAPAP APLSNSNAPP PFLSKTYDMV DDPATDQVVS 60 WSPTNNSFVV WNPPEFARDL LPKYFKHNNF SSFGFRKVDP DRWEFANEGF LRGQKHLLKS 120 INRRKPAHGH SHQQPQPSQG QNSVAACVEV GKFGLEEEVE RLKRDKNVLM QELIKLRQQQ 180 QSTDNQLQAM VQRLQGMEQR QQQMMSFLAK AVQSPSFLTQ FVQQQNESNR RIIEVNKKRR 240 LKQDEGGHSG TPDGQIVKYQ PPVNEAAKAM LRQIMTTDTS SSQLESFNDS PDNFLIGNGS 300 SSSSSLIDSG SSSSRASGVT LQEVPLISGP GSSSAISEVQ SSLRAANSGT VTGAPFSDIN 360 ALVGAQEAQS IPISQAGVII PELSQIPEMV PESLVDFPEE NMAPDAGVGF IENMASDAGD 420 GFIGDILGLD GSMPIDIDSI PPDPDIEALL KNWDQFLQSP EPDEMDSTSA EGGVPMGNEE 480 QPSTGNGWNK TQHNMDNLTE KMGLLTSDTK GV

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MGGANNNGDE ASMAGGGGGG AQQAGLAPAP APLSNSNAPP PFLSKTYDMV DDPATDQVVS  60
WSPTNNSFVV WNPPEFARDL LPKYFKHNNF SSFGFRKVDP DRWEFANEGF LRGQKHLLKS  120
INRRKPAHGH SHQQPQPSQG QNSVAACVEV GKFGLEEEVE RLKRDKNVLM QELIKLRQQQ  180
QSTDNQLQAM VQRLQGMEQR QQQMMSFLAK AVQSPSFLTQ FVQQQNESNR RIIEVNKKRR  240
LKQDEGGHSG TPDGQIVKYQ PPVNEAAKAM LRQIMTTDTS SSQLESFNDS PDNFLIGNGS  300
SSSSSLIDSG SSSSRASGVT LQEVPLISGP GSSSAISEVQ SSLRAANSGT VTGAPFSDIN  360
ALVGAQEAQS IPISQAGVII PELSQIPEMV PESLVDFPEE NMAPDAGVGF IENMASDAGD  420
GFIGDILGLD GSMPIDIDSI PPDPDIEALL KNWDQFLQSP EPDEMDSTSA EGGVPMGNEE  480
QPSTGNGWNK TQHNMDNLTE KMGLLTSDTK GV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	243	NKKRRLKQ
2	237	242	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-119	HSF family protein