PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000103.1_g410.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1034aa MW: 117470 Da PI: 8.1031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000103.1_g410.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	1.9e-10	419	463	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ Ed+ l+++v++ G ++W Ia +g++Rt+ qc r+q Pav_sc0000103.1_g410.1.mk 419 KSWTAKEDKNLLHLVQEKGIDNWFNIAVLLGTNRTPFQCLARYQR 463 58*****************************************96 PP
2	Myb_DNA-binding	45.2	2.1e-14	471	515	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ WT++Ed +l av+ lG g+W ++a+ + gRt+ qc +rw k Pav_sc0000103.1_g410.1.mk 471 KQEWTKDEDARLRSAVEALGEGDWQSVASALE-GRTGSQCSNRWKK 515 789***************************.*********98 PP
3	Myb_DNA-binding	44.7	3e-14	525	568	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Pav_sc0000103.1_g410.1.mk 525 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQAQCRDRYVN 568 8****************************.*********77 PP
4	Myb_DNA-binding	44.9	2.7e-14	577	620	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l +a++++G W+++a++++ +Rt+++c rw + Pav_sc0000103.1_g410.1.mk 577 GEWTEEEDSRLREAIAEYGYC-WSKVAACVP-RRTDNMCWRRWKVL 620 68***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence
MSPLTEREED QFSGSDREEE EEEDDDDDFD EDMEAIRRAC MLTGTNPDDL NPNNNNNHGG 60 DEPRHSSGSE AESDSDEVDD DLELLRKIRS RFSNFSDFCE PLSLKPLSSL PPAVSDDEED 120 DYQTLLSVQK RFAAYQNDTC KPVKETCNEI AHESSQGTED ACMAIHPLSD NAEGQPSASV 180 ELQRSDSCRP STLPAKYSTF PKSAQVFMDA IKKNRSSQKF LRSKLVQLEA KIEENRKLKE 240 RVKILKDFQV SCKKRTGEAL SQKKDPRVQL ILVNRPRKFR DLKAHDKKIS AMFYGPEENS 300 HVANYRMTLM KFLHSLDRKK WSKAEKKALE KGIRQQFQEM VLQFSVHESS CSERPYGYSN 360 HIDDILASIK DLEITPEKIR EFLPKVNWEQ LASMYIVGRS SGECEARWLN WEDPLINHKS 420 WTAKEDKNLL HLVQEKGIDN WFNIAVLLGT NRTPFQCLAR YQRSLNASIL KQEWTKDEDA 480 RLRSAVEALG EGDWQSVASA LEGRTGSQCS NRWKKSLHPT RKREGRWTPE EDKRLKVAQM 540 LFGPKNWNKT AQFVPGRTQA QCRDRYVNSL EPSLKWGEWT EEEDSRLREA IAEYGYCWSK 600 VAACVPRRTD NMCWRRWKVL FPDEVSLLKE EKRIRKAALM CNFVDRETER PALGPNDFRP 660 PIVTSTKTLT YSRKQKGKLS KVLKKIRSRR QRNNSQSCSK VSEIDSFDKV ETSDGHDASN 720 TKNKVRKQRR IRHKGTEPTG ECQVVVTLPC EQDTHKEPRE MSCSDQIVGT SDEDDTTLAC 780 FLRNKSKKRK LGPVPSINGK KKRKLVASAS AVQECPANSI QKGSEVHPEM DKVCDGNQIV 840 SFRKDDEFVV HCDDRISERM PSCSVQSSHL NGNIMASDNE PDGLKLVSGR KAGLQEPVRK 900 VVGIDPESDG DTDGVVLASL RKKKLKKRHP QTAKSSPHAC LPSGVTTRSE PLPKTLDQSN 960 DRSQVAFLAV GNEPGAIDIG KQHGVDHCET AREIVNIGAE GDHEAGDTTL ACFLRNKSKN 1020 SQRQSRRGDN QKPR

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence

MSPLTEREED QFSGSDREEE EEEDDDDDFD EDMEAIRRAC MLTGTNPDDL NPNNNNNHGG  60
DEPRHSSGSE AESDSDEVDD DLELLRKIRS RFSNFSDFCE PLSLKPLSSL PPAVSDDEED  120
DYQTLLSVQK RFAAYQNDTC KPVKETCNEI AHESSQGTED ACMAIHPLSD NAEGQPSASV  180
ELQRSDSCRP STLPAKYSTF PKSAQVFMDA IKKNRSSQKF LRSKLVQLEA KIEENRKLKE  240
RVKILKDFQV SCKKRTGEAL SQKKDPRVQL ILVNRPRKFR DLKAHDKKIS AMFYGPEENS  300
HVANYRMTLM KFLHSLDRKK WSKAEKKALE KGIRQQFQEM VLQFSVHESS CSERPYGYSN  360
HIDDILASIK DLEITPEKIR EFLPKVNWEQ LASMYIVGRS SGECEARWLN WEDPLINHKS  420
WTAKEDKNLL HLVQEKGIDN WFNIAVLLGT NRTPFQCLAR YQRSLNASIL KQEWTKDEDA  480
RLRSAVEALG EGDWQSVASA LEGRTGSQCS NRWKKSLHPT RKREGRWTPE EDKRLKVAQM  540
LFGPKNWNKT AQFVPGRTQA QCRDRYVNSL EPSLKWGEWT EEEDSRLREA IAEYGYCWSK  600
VAACVPRRTD NMCWRRWKVL FPDEVSLLKE EKRIRKAALM CNFVDRETER PALGPNDFRP  660
PIVTSTKTLT YSRKQKGKLS KVLKKIRSRR QRNNSQSCSK VSEIDSFDKV ETSDGHDASN  720
TKNKVRKQRR IRHKGTEPTG ECQVVVTLPC EQDTHKEPRE MSCSDQIVGT SDEDDTTLAC  780
FLRNKSKKRK LGPVPSINGK KKRKLVASAS AVQECPANSI QKGSEVHPEM DKVCDGNQIV  840
SFRKDDEFVV HCDDRISERM PSCSVQSSHL NGNIMASDNE PDGLKLVSGR KAGLQEPVRK  900
VVGIDPESDG DTDGVVLASL RKKKLKKRHP QTAKSSPHAC LPSGVTTRSE PLPKTLDQSN  960
DRSQVAFLAV GNEPGAIDIG KQHGVDHCET AREIVNIGAE GDHEAGDTTL ACFLRNKSKN  1020
SQRQSRRGDN QKPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	782	790	LRNKSKKRK
2	787	804	KKRKLGPVPSINGKKKRK
3	788	805	KKRKLGPVPSINGKKKRK
4	800	805	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein