PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000103.1_g1450.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 508aa    MW: 56790.8 Da    PI: 6.7825
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000103.1_g1450.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-202479156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                +++ +++t++q++ Le +F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Pav_sc0000103.1_g1450.1.mk 24 KKRYHRHTANQIQKLEGMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79
                                678899***********************************************998 PP
2START177.67.3e-562234472206
                                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...C CS
                       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...q 71 
                                 +a  a++el+++ + +ep+W ks+    + +n + + ++f+++ +       ++ea+r+sgvv+m+   lve ++d ++    
  Pav_sc0000103.1_g1450.1.mk 223 IAANAMEELLRLLQTNEPLWIKSAtdgrDVLNLESYERIFPRATShlknpdLRIEASRDSGVVIMNGLALVEMFMDPNKfgeL 305
                                 67889*******************999999999999999999888*********************************77777 PP

                                 T-TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                       START  72 Wdetlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147
                                 + + +  a+t+evissg      g l+lm+ elq+lsplv  R+f+f+Ry++q ++g w+ivdvS d +++++   +  R+++
  Pav_sc0000103.1_g1450.1.mk 306 FPTIVSMAKTIEVISSGmlgsqsGSLHLMYKELQVLSPLVQtREFYFLRYCQQIEQGLWAIVDVSYDFPRDNQ-FTNQCRSHR 387
                                 777777******************************************************************9.7999***** PP

                                 SSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 148 lpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                                 lpSg+li++++ng+skv wvehv+ +++ p h l+r l++sgla+ga +w+a+lqr ce+
  Pav_sc0000103.1_g1450.1.mk 388 LPSGCLIQDMPNGYSKVSWVEHVEIEDKAPtHRLYRDLIHSGLAFGAERWLAALQRMCER 447
                                 **********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    
MEFGSGGGAG SGGDHDASDS QRRKKRYHRH TANQIQKLEG MFKECPHPDE KQRLQLSREL  60
GLAPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRCE NIAIREALKN VICPACGVPP  120
LNEDSYFDEH KLRMENAQLK EELDRVSSIA AKCIGRPISQ LPPVQPIHVS SLELSMASFG  180
SHGVGGPSLD LDLLPGTTSS TMPSLPYHPT GLSDMDKSLM TDIAANAMEE LLRLLQTNEP  240
LWIKSATDGR DVLNLESYER IFPRATSHLK NPDLRIEASR DSGVVIMNGL ALVEMFMDPN  300
KFGELFPTIV SMAKTIEVIS SGMLGSQSGS LHLMYKELQV LSPLVQTREF YFLRYCQQIE  360
QGLWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVSWVEHV EIEDKAPTHR  420
LYRDLIHSGL AFGAERWLAA LQRMCERFAC LMVSGTSTRD LEGVTVAFQI LVSSLPSAKL  480
NLESVNTVNT LIGTTVQQIK AALNCNSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein