PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000099.1_g710.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ZF-HD

Protein Properties

Length: 354aa MW: 38902.2 Da PI: 9.8217

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000099.1_g710.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.8	4.5e-32	119	175	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +kvrY+eCl+NhAas Ggh++DGCgEfmps gee ++alkCaAC+CHRnFHR+e e Pav_sc0000099.1_g710.1.mk 119 QKVRYRECLRNHAASSGGHVLDGCGEFMPS-GEEDIPEALKCAACECHRNFHRKEIEG 175 689************************9.88889****************9875 PP
2	Homeobox	15.6	2.9e-05	266	326	1	57
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt+f++eq e + e+ e k ++ +++e ++L +++g++ ++ kvW +N ++ +kk Pav_sc0000099.1_g710.1.mk 266 KRFRTKFSQEQKEKMMEVAEklgwKIQKHDEQEVQKLCSEVGIKRQVFKVWMHNNKQAMKK 326 789***********9999777679999**************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MEVRGQDKVI GMPTTLGYNP PNRDSSSSKL SSSPALPSTA NSTIFINPLQ TLDPHPPPHH 60 QQPHQLNLSP HKSSRRDSEQ NPDPISSPIV VTPSATTTSI PGGSNFKAPP AQPPSPPPQK 120 VRYRECLRNH AASSGGHVLD GCGEFMPSGE EDIPEALKCA ACECHRNFHR KEIEGDHLPN 180 NYYVVNHQKH TISGRDSATR VLPLPPPPPP PVHHSAAGGP VPPMMMAFGG GGGGGGADES 240 SSEDLNMNNL FRATYAAGQQ AAGSKKRFRT KFSQEQKEKM MEVAEKLGWK IQKHDEQEVQ 300 KLCSEVGIKR QVFKVWMHNN KQAMKKKQMV KDVKGRKRKA KEEMRCQLFC RGVM

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MEVRGQDKVI GMPTTLGYNP PNRDSSSSKL SSSPALPSTA NSTIFINPLQ TLDPHPPPHH  60
QQPHQLNLSP HKSSRRDSEQ NPDPISSPIV VTPSATTTSI PGGSNFKAPP AQPPSPPPQK  120
VRYRECLRNH AASSGGHVLD GCGEFMPSGE EDIPEALKCA ACECHRNFHR KEIEGDHLPN  180
NYYVVNHQKH TISGRDSATR VLPLPPPPPP PVHHSAAGGP VPPMMMAFGG GGGGGGADES  240
SSEDLNMNNL FRATYAAGQQ AAGSKKRFRT KFSQEQKEKM MEVAEKLGWK IQKHDEQEVQ  300
KLCSEVGIKR QVFKVWMHNN KQAMKKKQMV KDVKGRKRKA KEEMRCQLFC RGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	339	KKKQMVKDVKGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	9e-57	ZF-HD family protein