PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000099.1_g180.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 640aa MW: 74134 Da PI: 7.9626

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000099.1_g180.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	14	97	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 n+YA + GFs+rk + ++ +n+ + +r++ Cskeg++++e+ e ++ +r trtgCka ++ + + +g w++++++l+HnHe+ Pav_sc0000099.1_g180.1.br 14 NTYAFRKGFSIRKGNIRRDAQNN-VRQRDYFCSKEGFQSDEDLC-EVKKVRRLDTRTGCKALIRFTVD-NGIWKISHINLDHNHEF 96 89************9996666.*************999.899999************9.*************98 PP FAR1 90 a 90 a Pav_sc0000099.1_g180.1.br 97 A 97 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MEVSNEAEAY NLCNTYAFRK GFSIRKGNIR RDAQNNVRQR DYFCSKEGFQ SDEDLCEVKK 60 VRRLDTRTGC KALIRFTVDN GIWKISHINL DHNHEFAKPE ERQFLRSGRH IPRVRAGILG 120 PKVDESTRPT KSYSYLGKKF GNAENVGSTN QDCLNYLQRN KEEMLEGGDG QSLINYFKHK 180 QMEDPSFFYS VQVDQFNRIT NYFWRDGRSK LDYDCFGDVV CFDTTFRTKK YNLICAPFVG 240 VNHHCKNVLF GCAFVSDEST DSFIWLFETF LESMGYKQPK TIFTDVGNAM ANAIAVMLRE 300 TRHRLCIWHI SKNATQYIGS HYSNHEFKEH FNKCFHDCLT EAEFESTWND LIRKFNLEGN 360 SWLQELYSLR EKWCPAFSLD TFTANIRSSN RGESITSTFH QISTKTMDLI GLVQHYEKKT 420 KVVRSAELEE DFRCKNGMPH LRANSGIFKH AASEYTIKMY SFFENELMSI FGVRMIEVGN 480 DGNQYIYEAI EEGHPRVYII EYNSATSMVS CSCKLFESIG LLCRHALKVL DLKNFTSIPT 540 RYIVKRWTKG AKKRIVESSH LYESSYKMGK SAQSLRLSEL MHEGNNVFSI GSLCDSGTRI 600 VKQKLVEAMK LLESDEETTS MQGNLNKVDD QFVRDVLLDN

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MEVSNEAEAY NLCNTYAFRK GFSIRKGNIR RDAQNNVRQR DYFCSKEGFQ SDEDLCEVKK  60
VRRLDTRTGC KALIRFTVDN GIWKISHINL DHNHEFAKPE ERQFLRSGRH IPRVRAGILG  120
PKVDESTRPT KSYSYLGKKF GNAENVGSTN QDCLNYLQRN KEEMLEGGDG QSLINYFKHK  180
QMEDPSFFYS VQVDQFNRIT NYFWRDGRSK LDYDCFGDVV CFDTTFRTKK YNLICAPFVG  240
VNHHCKNVLF GCAFVSDEST DSFIWLFETF LESMGYKQPK TIFTDVGNAM ANAIAVMLRE  300
TRHRLCIWHI SKNATQYIGS HYSNHEFKEH FNKCFHDCLT EAEFESTWND LIRKFNLEGN  360
SWLQELYSLR EKWCPAFSLD TFTANIRSSN RGESITSTFH QISTKTMDLI GLVQHYEKKT  420
KVVRSAELEE DFRCKNGMPH LRANSGIFKH AASEYTIKMY SFFENELMSI FGVRMIEVGN  480
DGNQYIYEAI EEGHPRVYII EYNSATSMVS CSCKLFESIG LLCRHALKVL DLKNFTSIPT  540
RYIVKRWTKG AKKRIVESSH LYESSYKMGK SAQSLRLSEL MHEGNNVFSI GSLCDSGTRI  600
VKQKLVEAMK LLESDEETTS MQGNLNKVDD QFVRDVLLDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein