PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000094.1_g540.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25854.1 Da PI: 8.5823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.5 | 1.2e-18 | 10 | 140 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkk...leleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atk 79 f+FhPtd+e++ L k v +++ + + ++++ d++ + ePw++ + + + +++++yf ++ ++ + ++r++r + + Pav_sc0000094.1_g540.1.br 10 AFHFHPTDQEIIRSILYKMVIEREplnPSYHGIVHDEDLFGTkEPWKIWEdygRDQLHDQDLYFLCQLKRINYCSSRTHRrIGR 93 69*****************988887765556679999*998779****74334434477899******9999998988886889 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+W++ k +++ +++ +g + L + + ++ + ++W+++eyrl Pav_sc0000094.1_g540.1.br 94 EGTWSQRVAAKLIYDGNRNPIGSVRKLRYKN--PKSEHDAEWFLDEYRL 140 ***************999***********84..444459********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence |
MANSCNVSLA FHFHPTDQEI IRSILYKMVI EREPLNPSYH GIVHDEDLFG TKEPWKIWED 60 YGRDQLHDQD LYFLCQLKRI NYCSSRTHRR IGREGTWSQR VAAKLIYDGN RNPIGSVRKL 120 RYKNPKSEHD AEWFLDEYRL FVGDDGHDQT SPGFDFVVCR LRKNHNKFDR MRASVHKKTN 180 KAPQQIHERK RKSMNVVINI DDDEEVPHGC SSAKSHSCGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.1 | 4e-11 | NAC family protein |