PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000094.1_g330.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 185aa MW: 21138.2 Da PI: 10.378 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 27.1 | 9e-09 | 111 | 161 | 7 | 57 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfile 57 e+++e+++++k ++P+ r+k+i+++++ +is +a l+ ka e f+ + Pav_sc0000094.1_g330.1.mk 111 EEEVEEKEEVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQK 161 45699***********************999***************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MATPRKDITP KKSKETKKPS SKAITPKKTQ ETKKPSIKKT PETKKPGTKK TISNKNQTSN 60 GNVSDSDVEE IPSSSSESLK DTKQNEGKIT KTPTSKSKKS NKKRKQKQEE EEEVEEKEEV 120 KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY 180 KHLCM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 19 | RKDITPKKSKETKKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-20 | NF-YC family protein |