PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000078.1_g190.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 99aa    MW: 11156.6 Da    PI: 8.8932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000078.1_g190.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-08551246
                               SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                               g+WT    + + +a + + ++   +W+  ar +g g++ +++k ++ +
  Pav_sc0000078.1_g190.1.br  5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKRHYEM 51
                               89********************************.***********76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK SVEEVKRHYE MLVEDVNKIE  60
AGEVPLPNYR KPGAVAGNGK AYSNSMDIEE QRMKSLKLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-38MYB_related family protein