PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000065.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 1009aa MW: 112292 Da PI: 6.7404

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000065.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	121.5	3.8e-38	143	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS......SEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs......rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCs rfh l+efDe+krsCrrrLa+hn+rrrk+++ Pav_sc0000065.1_g070.1.mk 143 VCQVEDCKADLSNAKDYHRRHKVCDMHSKASTALVGNAMQRFCQQCSrvtpmdRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 226 6*******************************************95555555*************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MEAEFGGKTH NYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE 60 TPSNAGLSNS SSSGSDNISP RNEKGKRELE KRRRAVFVEN EEFRDEAGSL NLNLGGQAYP 120 IMEGEVQTGK KTKIVGTTSN RAVCQVEDCK ADLSNAKDYH RRHKVCDMHS KASTALVGNA 180 MQRFCQQCSR VTPMDRFHVL QEFDEGKRSC RRRLAGHNRR RRKTHPDTAA NGGSLNDERG 240 SSYLLISLLR ILSNMHSSSS DQTKDQDLLS HLLRSLANLA GTADGRNIST LLQGSQGLFN 300 SGTSVQTAKV PDMDDGVNLE DLRPVGQCSV VPASDMLERR ISSVDDPGSL QVLSGLQATE 360 PLPSRDSSES KSVTPEATSR RFQLNGIDLN NTYDDSQDYL ENLGNSHVPA SPGTASLGFS 420 SWMQRDSHKS SPPQTSGNSD LTSTQSPSSS SGEAQSRTDR IVFKLFGKDP NDLPFILRSQ 480 ILDWLSLSPT DIESYIRPGC IILTIYLRLE KSTWEELCCH LGSSLKTLLD AADDPFWRTG 540 WVYTRVQHFV TFTYNGQVVL DTPLPLKSDK SCRISYIKPI AVSVSERAQF VVKGFNLSHS 600 ATRLLCALEG KYLVQETCYD MMDGVHTTVE HDELQCLKFS CSIPDVTGRG FIEVEDHGLS 660 SSFFPFIVAE QEVCSEICML EGEIEVAESA DAEKLEAKNQ ALDFIHELGW LLHRSRAKFR 720 LGHSDPNLDL FPFSRFRLLM EFSIEHDWCV VVKKLLGILF EGTVDAGEHT SIEFALLDMS 780 LLHRAVRRNC RSMVEFLLKF IPNQGLTGSE QKQQVDRDGN SFLFKPDAVG PMGLTPLHVA 840 ASADGYEHVL DALTDDTGKV GIEAWKNARD STGLTPYDYA CLQSRYSYVH LVQRKISKTL 900 ESGHVVLDIP GVILDRNGKQ KQSEAYKPSR VASLETEKIE MKVILRHCKL CAQKPAYGNT 960 RSLVYRPAML SMVAVAAVCV CVALLFKSTP EVLFVFQPFR WELLKFGSS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MEAEFGGKTH NYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE  60
TPSNAGLSNS SSSGSDNISP RNEKGKRELE KRRRAVFVEN EEFRDEAGSL NLNLGGQAYP  120
IMEGEVQTGK KTKIVGTTSN RAVCQVEDCK ADLSNAKDYH RRHKVCDMHS KASTALVGNA  180
MQRFCQQCSR VTPMDRFHVL QEFDEGKRSC RRRLAGHNRR RRKTHPDTAA NGGSLNDERG  240
SSYLLISLLR ILSNMHSSSS DQTKDQDLLS HLLRSLANLA GTADGRNIST LLQGSQGLFN  300
SGTSVQTAKV PDMDDGVNLE DLRPVGQCSV VPASDMLERR ISSVDDPGSL QVLSGLQATE  360
PLPSRDSSES KSVTPEATSR RFQLNGIDLN NTYDDSQDYL ENLGNSHVPA SPGTASLGFS  420
SWMQRDSHKS SPPQTSGNSD LTSTQSPSSS SGEAQSRTDR IVFKLFGKDP NDLPFILRSQ  480
ILDWLSLSPT DIESYIRPGC IILTIYLRLE KSTWEELCCH LGSSLKTLLD AADDPFWRTG  540
WVYTRVQHFV TFTYNGQVVL DTPLPLKSDK SCRISYIKPI AVSVSERAQF VVKGFNLSHS  600
ATRLLCALEG KYLVQETCYD MMDGVHTTVE HDELQCLKFS CSIPDVTGRG FIEVEDHGLS  660
SSFFPFIVAE QEVCSEICML EGEIEVAESA DAEKLEAKNQ ALDFIHELGW LLHRSRAKFR  720
LGHSDPNLDL FPFSRFRLLM EFSIEHDWCV VVKKLLGILF EGTVDAGEHT SIEFALLDMS  780
LLHRAVRRNC RSMVEFLLKF IPNQGLTGSE QKQQVDRDGN SFLFKPDAVG PMGLTPLHVA  840
ASADGYEHVL DALTDDTGKV GIEAWKNARD STGLTPYDYA CLQSRYSYVH LVQRKISKTL  900
ESGHVVLDIP GVILDRNGKQ KQSEAYKPSR VASLETEKIE MKVILRHCKL CAQKPAYGNT  960
RSLVYRPAML SMVAVAAVCV CVALLFKSTP EVLFVFQPFR WELLKFGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein