PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000051.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 324aa    MW: 35601.9 Da    PI: 5.9849
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000051.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-071757438
                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                               r+C+++ +   + +C+ ++ +lC  C  ++H        H+
  Pav_sc0000051.1_g110.1.mk 17 RVCDTCRSAACTVYCRADSAYLCSGCDATIHAAnrvasrHE 57
                               79******99*********************5556666676 PP
2zf-B_box30.95.5e-1059104342
                   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                 ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  Pav_sc0000051.1_g110.1.mk  59 VWVCEACEQAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 104
                                689*****************************66899999**9997 PP
3CCT70.15.4e-24255298144
                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pav_sc0000051.1_g110.1.mk 255 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 298
                                9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MLKEESNGAA ANNKWARVCD TCRSAACTVY CRADSAYLCS GCDATIHAAN RVASRHERVW  60
VCEACEQAPA AFLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LYGPQATDSG  120
GIVVGSAAAE TEDGFLSQEG DETIDEEDED EAASWLLLNP VKNNNNNCNN NNNQIQMQKQ  180
SFHQLGLEYE SSKAAYSYNG SLSNTVSVSS MDVGVVPDST MSDISISHPR TPKGTIDLFS  240
GPPIQMPFQL SPLDREARVL RYREKKKTRK FEKTIRYASR KAYAETRPRI KGRFAKRTEM  300
EVEVDQMFST TLMAENGYGI VPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-113CO-like family protein