PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000046.1_g410.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 472aa MW: 51584.8 Da PI: 8.8244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000046.1_g410.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	70	90	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Pav_sc0000046.1_g410.1.mk 70 CEICGKGFQRDQNLQLHRRGH 90 *******************88 PP
2	zf-C2H2	12.9	0.00034	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pav_sc0000046.1_g410.1.mk 144 WKCDKCSKRYAVQSDWKAHSKTC 166 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MALNEESIPP MNGFVQDPAA GSISPPPPPP AKKKRNLPGN PGKLLSFPNP EAEVIALSPK 60 TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT NKEPRKRVYV CPEKSCVHHH 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEETA RVNAASNMNN IPMGGNINYQ YMGYSIGAVA GPNNNITAQQ 240 YFSSIFKPMI STHNNIDDEA SRGLSIGMMG GNNNYNNNKN HDHHRPCPPP SDYDQIDNWV 300 VGNKQLISSP SPYSISNSNA PHHQESITCT STASSSCSSS SLALISNNII SDVPSLYSSN 360 MSATALLQKA AQIGSTTSSE ETLLGSFGMN NISKVCGLYG ITSPDDHGHD HHAKRRSIQN 420 CSAATTTTTN DHHHQQETIA AGGGGGQTRD FLGVGVHAIC HSTSPSINGY WT

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MALNEESIPP MNGFVQDPAA GSISPPPPPP AKKKRNLPGN PGKLLSFPNP EAEVIALSPK  60
TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT NKEPRKRVYV CPEKSCVHHH  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEETA RVNAASNMNN IPMGGNINYQ YMGYSIGAVA GPNNNITAQQ  240
YFSSIFKPMI STHNNIDDEA SRGLSIGMMG GNNNYNNNKN HDHHRPCPPP SDYDQIDNWV  300
VGNKQLISSP SPYSISNSNA PHHQESITCT STASSSCSSS SLALISNNII SDVPSLYSSN  360
MSATALLQKA AQIGSTTSSE ETLLGSFGMN NISKVCGLYG ITSPDDHGHD HHAKRRSIQN  420
CSAATTTTTN DHHHQQETIA AGGGGGQTRD FLGVGVHAIC HSTSPSINGY WT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-125	C2H2 family protein