PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000044.1_g930.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 401aa    MW: 43681.8 Da    PI: 6.3531
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000044.1_g930.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.16e-19316350135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pav_sc0000044.1_g930.1.mk 316 CSHCGVQKTPQWRTGPNGAKTLCNACGVRYKSGRL 350
                                *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MLYQTHHSFL FQFHPFTCSI PSSSSTTSTS TSTSTSLLSS LSPHPPLLLT CRPPLPPQQV  60
ETEMECVEAA LKTSIRKEMA VKASPQVVFD DLLWGGVNGQ NGVACDDFSV DDLLDFSNED  120
GFVETEAEED DKDKVKGFAS VSPQKQPQDP ENSDLSDKNE LGPEPTSELS VPADDLENLE  180
WLSHFVEESF TEFTTSLPAG FIPEKPKTEK RPDPATPLPE KPCFKTPVPA KARSKRTRTG  240
GRVWSLGSPS LTETSSSSSS SSSSSSPSSP WLIYPTTQNH EPAEAGGEPV ASVEKPPKKP  300
KRRLVDGSSS QPPRRCSHCG VQKTPQWRTG PNGAKTLCNA CGVRYKSGRL LPEYRPACSP  360
TFSSELHSNH HRKVLEMRKK KDVPGVPEPG LTRPPVVPSF G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303PKKPKRR
2297304PKKPKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-85GATA family protein