PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000044.1_g610.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 305aa MW: 33845.9 Da PI: 6.3109 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 6.1e-20 | 30 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ Pav_sc0000044.1_g610.1.mk 30 STRWTPTSDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91 58*****************8678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.5 | 1.1e-36 | 29 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Pav_sc0000044.1_g610.1.mk 29 SSTRWTPTSDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93 789***************9779*****************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MEPQQTQQQP NEDGSNKGTS GTNFLCRQSS TRWTPTSDQI RILKDLYYNN GVRSPSAEQI 60 QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFIDVPA PPIMQRSGLG INNNAPTAYE 120 PINHSNKYPN ISASAGVSSA SASSAGVIAV GQMGSYGYGS MTMEKSFRDC SISAAGGTSS 180 GHVGGSNNNI GHNVGSWVGV DPYSSPYTLF DKRSSSRQVF GDQENMMDEE DHEYQENLQD 240 SPEIETLPLF PMHGEDIHGF GNIKSTSDSY YSGWYRSDEG NNGRTSLELS LNSYGHMTPD 300 YFSSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-48 | WOX family protein |