PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000042.1_g580.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 243aa    MW: 27460.4 Da    PI: 10.4714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000042.1_g580.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-202978255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f tae Aa a++aa+++++g
  Pav_sc0000042.1_g580.1.mk 29 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFETAEAAALAYDAAALRFKG 78
                               7********.**********9...3.35***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGPFLVMN QRRKRMIIKS LSRNVRRRHY RGVRQRPWGK WAAEIRDPNK AARVWLGTFE  60
TAEAAALAYD AAALRFKGSK AKLNFPERVQ GGTELGYLTT TGSPQDLAAG GSQRTELAHH  120
NQPLSDHQYQ LQANPNNVHF TQPDQYAQYF RGGNYENLSY DVLPSTFYER ERSFVSQTLS  180
ATTTTSSSSS SVLFVPSQQE DQDQHVQQQH PLSFSMAQQP FGSSSSSSSD PSKKKKDFRQ  240
QQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-22ERF family protein