PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000042.1_g440.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 541aa MW: 58890.8 Da PI: 5.2577

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000042.1_g440.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	356	398	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Pav_sc0000042.1_g440.1.mk 356 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 398 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MLPRLNGAVW MGDREDRDSA SWNRTAAATT NNSNCGVVES KDELGSLSTF KSMLDVDDDW 60 YLPNNSIQSH SDVRDIAFSP SFADPESLLL NPVDSSSSCS PSSSVFNNLD PNQVHYYLPQ 120 NSTLSSLLNV VPNNPLEHGF DLGCDIGFLD TQASSGSSLM NRGGGVLTGF SGLSSNNQMN 180 AQDLCSNLQF STTRLPQLLE NSSNFSVFRG FEDTSANALF PNRPKLLRPL DSVPDVGAPP 240 TLFQKRVQKN LADNGGNLGV LGSEGGLVLN HMEGGERKRE MGEENERKRK LSGGDDFEDV 300 SIDGSGLNYD SDDFTENTKM DDGAKNGGNS SNANSTVTGG GDHKGKKKGL PAKNLMAERR 360 RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ KINNLHNELE SIPPGSSLTP 420 TGSTFHPLTP TPATLPSRIK EELCPSSLPS PNGQPARVEV RLREGRAVNI HMFCGRRPGL 480 LLSTMRTLDS LGLDIQQAVI SCFNGFAMDV FRAEQCKEGQ DVHPDQIKAV LLESVEFHGL 540 I

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MLPRLNGAVW MGDREDRDSA SWNRTAAATT NNSNCGVVES KDELGSLSTF KSMLDVDDDW  60
YLPNNSIQSH SDVRDIAFSP SFADPESLLL NPVDSSSSCS PSSSVFNNLD PNQVHYYLPQ  120
NSTLSSLLNV VPNNPLEHGF DLGCDIGFLD TQASSGSSLM NRGGGVLTGF SGLSSNNQMN  180
AQDLCSNLQF STTRLPQLLE NSSNFSVFRG FEDTSANALF PNRPKLLRPL DSVPDVGAPP  240
TLFQKRVQKN LADNGGNLGV LGSEGGLVLN HMEGGERKRE MGEENERKRK LSGGDDFEDV  300
SIDGSGLNYD SDDFTENTKM DDGAKNGGNS SNANSTVTGG GDHKGKKKGL PAKNLMAERR  360
RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ KINNLHNELE SIPPGSSLTP  420
TGSTFHPLTP TPATLPSRIK EELCPSSLPS PNGQPARVEV RLREGRAVNI HMFCGRRPGL  480
LLSTMRTLDS LGLDIQQAVI SCFNGFAMDV FRAEQCKEGQ DVHPDQIKAV LLESVEFHGL  540
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	364	KKKGLPAKNLMAERRRRKK
2	358	365	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-128	bHLH family protein