PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000028.1_g850.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 1027aa MW: 114853 Da PI: 7.2384

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000028.1_g850.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	107.6	7.8e-34	20	136	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 +e k+rwl++ ei++iL n++++elt++++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK+ +v+ Pav_sc0000028.1_g850.1.mk 20 QEaKERWLRPAEICEILRNYQNFELTADPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKIVNVKDQGWQC 103 5559***********************************************************************987643333 PP CG-1 86 ahseenptfqrrcywl.Leeelekivlvhylev 117 +s+ + + e+l++ivlvhy++v Pav_sc0000028.1_g850.1.mk 104 RRSSLLLCPWGGQFEFsTAEHLQHIVLVHYRNV 136 444444443333443314556688899998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MADTRKYLPT QQLDLAQILQ EAKERWLRPA EICEILRNYQ NFELTADPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKIVNVKDQG WQCRRSSLLL CPWGGQFEFS 120 TAEHLQHIVL VHYRNVGEAY QSGVPCLLAD PGSQVASPQS VSAPFSAQAN SPAPTVQTSF 180 ASSPNRVDWN GKTLSTEFED VDSGGDAGTS SVAQSMFGSV LHNASLLSQV GGFPESFRDP 240 LSSWYAGPKF AHGAGSSVWN GMDSSTRNER SMHDQNLFVE APNRADFITH KLTDARLDVD 300 CRVNNVTCED RLTTDIDVQV ATASSQREAQ VSKEHDFNVF HPQVQDYSDP QVVVNSSNQV 360 EENSRDGGVR NAESVELKKL DSFGRWMDKE IGVDCDDSLM ASDSGNYWSP LDAENGDKEV 420 SSLSHHMHLD IDSLGPSLSQ EQLFSIHDFS PDWAYSETET KVLIVGSFLG SKKHTTETKW 480 GCMFGEIEVS AEVLSNNVIR CQTPLHAPGC VPFYVTCRNR LACSEVREFE YREKPIGIAI 540 NTSKDDELRF RIRLAKLSSL GSERKWLECT ALDCDKCKLK SSIFSMRNNR ESDWETIDGA 600 SVACKSDHLT HRDVLIQNLL KDRLCEWLVC KLHEGGKGPH VLDNEGQGVL HLTAALGYEW 660 AMGPIIASGI SPNFRDARGR TGLHWASYFG SFNFKFSISR EETVIALLRL GAAPGAVEDP 720 TSAFHGGQTA ADLASSRGHK GIAGYLAEAD LTSHLETLTM NENIVNNVAA TIAAEKAIET 780 AEVITTDVVV DEQYSFKSSM AAVRKSAHAA ALIQEAFRTR SFRQRQLTKS GTDVSEVQSH 840 DLIARRSLKR VQKFAHYEDY LHVAAALKIQ QNYRGWKGRK DFLKIRDRIV KIQAHVRGHQ 900 VRKNYKKVVW SVGILEKVIL RWRRKGAGLR GFRVEKAVED VSSAVKKNDD YEFLSVGRKQ 960 KYAGVEKALS RVRSMARQPE AREQYMRLLS KFEKLKLADG ESPASNQIES SDERVLDEVL 1020 LALTEGQ

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MADTRKYLPT QQLDLAQILQ EAKERWLRPA EICEILRNYQ NFELTADPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKIVNVKDQG WQCRRSSLLL CPWGGQFEFS  120
TAEHLQHIVL VHYRNVGEAY QSGVPCLLAD PGSQVASPQS VSAPFSAQAN SPAPTVQTSF  180
ASSPNRVDWN GKTLSTEFED VDSGGDAGTS SVAQSMFGSV LHNASLLSQV GGFPESFRDP  240
LSSWYAGPKF AHGAGSSVWN GMDSSTRNER SMHDQNLFVE APNRADFITH KLTDARLDVD  300
CRVNNVTCED RLTTDIDVQV ATASSQREAQ VSKEHDFNVF HPQVQDYSDP QVVVNSSNQV  360
EENSRDGGVR NAESVELKKL DSFGRWMDKE IGVDCDDSLM ASDSGNYWSP LDAENGDKEV  420
SSLSHHMHLD IDSLGPSLSQ EQLFSIHDFS PDWAYSETET KVLIVGSFLG SKKHTTETKW  480
GCMFGEIEVS AEVLSNNVIR CQTPLHAPGC VPFYVTCRNR LACSEVREFE YREKPIGIAI  540
NTSKDDELRF RIRLAKLSSL GSERKWLECT ALDCDKCKLK SSIFSMRNNR ESDWETIDGA  600
SVACKSDHLT HRDVLIQNLL KDRLCEWLVC KLHEGGKGPH VLDNEGQGVL HLTAALGYEW  660
AMGPIIASGI SPNFRDARGR TGLHWASYFG SFNFKFSISR EETVIALLRL GAAPGAVEDP  720
TSAFHGGQTA ADLASSRGHK GIAGYLAEAD LTSHLETLTM NENIVNNVAA TIAAEKAIET  780
AEVITTDVVV DEQYSFKSSM AAVRKSAHAA ALIQEAFRTR SFRQRQLTKS GTDVSEVQSH  840
DLIARRSLKR VQKFAHYEDY LHVAAALKIQ QNYRGWKGRK DFLKIRDRIV KIQAHVRGHQ  900
VRKNYKKVVW SVGILEKVIL RWRRKGAGLR GFRVEKAVED VSSAVKKNDD YEFLSVGRKQ  960
KYAGVEKALS RVRSMARQPE AREQYMRLLS KFEKLKLADG ESPASNQIES SDERVLDEVL  1020
LALTEGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-157	CAMTA family protein