PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000009.1_g1340.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 162aa    MW: 18483 Da    PI: 4.6512
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000009.1_g1340.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.3e-1950130186
                        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                                 +fY+eYAk+ GF  +k + ++sk +ge+++++f C ++gk+++++       ++ +  +++Cka+l+vk++ dgkw v + ++
  Pav_sc0000009.1_g1340.1.br  50 EFYSEYAKQKGFAASKVSCRQSKASGECISAKFACMRYGKKRKSDAI-----NPWPCLKIDCKASLEVKRRFDGKWLVCNSVK 127
                                 6****************************************998776.....9****************************** PP

                        FAR1  84 eHn 86 
                                 eHn
  Pav_sc0000009.1_g1340.1.br 128 EHN 130
                                 **9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MGVEIDLNLP EEDVDGVSQD NTNIFESASF INEDIDFSEM EFHSDDRAYE FYSEYAKQKG  60
FAASKVSCRQ SKASGECISA KFACMRYGKK RKSDAINPWP CLKIDCKASL EVKRRFDGKW  120
LVCNSVKEHN MIFIQSIYTT FQVIEESPVP TSIILMLCIQ SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.19e-29FAR1 family protein