PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4051349.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21762.2 Da    PI: 4.5263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4051349.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.9e-18959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               ++ienk  r vtfs+Rrng++KKA+  S L +  va++++s+ g+ y+y+s
  Pav_co4051349.1_g010.1.mk  9 EKIENKQSRLVTFSRRRNGLFKKAKDFSNLSGSSVAILVISPAGRRYTYAS 59
                               57***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MGKKKISIEK IENKQSRLVT FSRRRNGLFK KAKDFSNLSG SSVAILVISP AGRRYTYASP  60
SFDSVVDQFL SETIDGSSTV TDGSSSFDYV DDQFLPTTNA GSTSVDSMVD QFLSTTAPSP  120
SYDSVIDEFL STAIGSPSVD STADQIVPIA TVDSTTSRSF RDTLKALSDI NIEACNDLEE  180
LMTLKNNLEQ IIRERTRLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-14M-type_MADS family protein