PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_co4022861.1_g010.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 12307.8 Da PI: 5.4899 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.1 | 2.7e-18 | 2 | 53 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Pav_co4022861.1_g010.1.mk 2 LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 53 799********************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence |
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLALA QAEVVHLRVR 60 QTASFSNHGL SPASPTNSGS PSSKFMGSQA RPIFDMDMMV DHTSLGLGES MWSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-38 | LBD family protein |