PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON79655.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 466aa MW: 51127.2 Da PI: 8.8821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON79655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	43	64	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + L H+ +H PON79655.1 43 VCKECGKGFQSLKALCGHMASH 64 6******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MSQKDHSGSE AGKQPGYILR ENPKKTRRFA DASGRALLKE LKVCKECGKG FQSLKALCGH 60 MASHSDKERF VINKYEQHSG TSEKQKLVMD SQSDTETSAP KQRRLSRRIR SKNLDVYSSL 120 GNGSSSVSGI EQEQQEVAIS LMLLSRDSGP KGGLNSVGES SDNNSVVLEA KSSSIDMIIS 180 GKKVLSSVTN LNETLEAKKA RGGELNFPKN VSVSDNSDSG YFRNGPKKIE SDVSVDGFVR 240 NVDFKKLEVE SGSGFGKNLL DEEGKDQVER GSSKYELRKR TRNGLYRPES LMGSHKNEAN 300 CSPNGGICRN GQKRSKYECL TCNKTFHSHR ALGGHRANHT KNHGCCESIC ESGENSIETD 360 HSPIPVANDR LIENGTGKTP IKEDFAERKP VSKKSKGHEC PICFRIFKSG QALGGHKRSH 420 FVGGREANTM VIRQEPPEAE ITVLFDLNLP APTEEDANGD VGFMAW

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MSQKDHSGSE AGKQPGYILR ENPKKTRRFA DASGRALLKE LKVCKECGKG FQSLKALCGH  60
MASHSDKERF VINKYEQHSG TSEKQKLVMD SQSDTETSAP KQRRLSRRIR SKNLDVYSSL  120
GNGSSSVSGI EQEQQEVAIS LMLLSRDSGP KGGLNSVGES SDNNSVVLEA KSSSIDMIIS  180
GKKVLSSVTN LNETLEAKKA RGGELNFPKN VSVSDNSDSG YFRNGPKKIE SDVSVDGFVR  240
NVDFKKLEVE SGSGFGKNLL DEEGKDQVER GSSKYELRKR TRNGLYRPES LMGSHKNEAN  300
CSPNGGICRN GQKRSKYECL TCNKTFHSHR ALGGHRANHT KNHGCCESIC ESGENSIETD  360
HSPIPVANDR LIENGTGKTP IKEDFAERKP VSKKSKGHEC PICFRIFKSG QALGGHKRSH  420
FVGGREANTM VIRQEPPEAE ITVLFDLNLP APTEEDANGD VGFMAW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-83	C2H2 family protein