PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON79253.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 483aa MW: 53488.5 Da PI: 7.8133

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON79253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON79253.1 84 YVCEICNQGFQRDQNLQMHRRRH 106 9*********************9 PP
2	zf-C2H2	16.5	2.4e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PON79253.1 161 WVCDKCSKAYAVQSDYKAHLKTC 183 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MLEKSNNTAS SSGAADPSSS SDHNHHHQNH YAFPNNSCEN GVNTNSNNNN NCNSKRKRRP 60 AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV 120 KKRVFVCPET SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCDKCSKAY AVQSDYKAHL 180 KTCGTRGHSC DCGRVFSRVE SFIEHQDSCT VRQVRPELQA LQSAATAAAC SSRTASSTSP 240 SSDGNFGNIA APFPAGVILN LPRPTEPNMF LSSSSERAST NKHSITNIST NQHQQNLLEL 300 QLLPSSEALG RSMQNSYEEN HATHLKLSIG SFDSEKSELP NEPNLDAMRI SNGGVSATEP 360 VAALEVSRVR DFANEEMKLA MAEKSYAEDA RREAKRQIEM AEMEFTSAKR IRQQAQAELE 420 KAQLLREQAT KKVSSTILQI TCQSCKQQFQ MTPSAVGGPP DETTSLAMSY MSSATTEGEG 480 EGE

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MLEKSNNTAS SSGAADPSSS SDHNHHHQNH YAFPNNSCEN GVNTNSNNNN NCNSKRKRRP  60
AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV  120
KKRVFVCPET SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCDKCSKAY AVQSDYKAHL  180
KTCGTRGHSC DCGRVFSRVE SFIEHQDSCT VRQVRPELQA LQSAATAAAC SSRTASSTSP  240
SSDGNFGNIA APFPAGVILN LPRPTEPNMF LSSSSERAST NKHSITNIST NQHQQNLLEL  300
QLLPSSEALG RSMQNSYEEN HATHLKLSIG SFDSEKSELP NEPNLDAMRI SNGGVSATEP  360
VAALEVSRVR DFANEEMKLA MAEKSYAEDA RREAKRQIEM AEMEFTSAKR IRQQAQAELE  420
KAQLLREQAT KKVSSTILQI TCQSCKQQFQ MTPSAVGGPP DETTSLAMSY MSSATTEGEG  480
EGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	60	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-131	C2H2 family protein