PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78604.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

CO-like

Protein Properties

Length: 498aa MW: 55427.8 Da PI: 7.3736

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.6	1.5e-09	22	65	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C +++ +lC+ C + H+ H++v PON78604.1 22 ARACDNCVKKRARWYCASDDAFLCQACDHSVHSAnslarrHERV 65 578*****************************657788888876 PP
2	CCT	67.7	3e-23	440	483	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PON78604.1 440 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 483 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MNTSMNYNNK KASNDVVGGK TARACDNCVK KRARWYCASD DAFLCQACDH SVHSANSLAR 60 RHERVRLKTA SSSRSPPPLR LKPTSHESPS PTWHQGFTRK ARTPRHGRSR LGFTKPRGRS 120 STSSSTSSGT APNPFSLVPE FGGDETSQSH DENEEQLLYR VPIYDPFVAQ LCSSVPEMSK 180 TTSFGANDNN HNGTSPDEEN NSSNDNENLH GFLLPAHEMD DLAEFAADVE SLLGRGLEND 240 ECFGMEVLGF VDCKDGREKT TGSESRLGEG RVVKVEEDEE GEGEGEDMGS GGLADMMRET 300 FELNFDDYDE SPPSCGEEEV EEEKVGLKEM KNDKGNDLND VVKNSKAMMM TTMKKKKKKK 360 KKILLRLDYE AVSTAWASQG GSPWTTGDRP DFDPDACLPD CLSTCNAAQL RQHHHHHHYV 420 DMGVGVGGLM NAAILGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV 480 KRASFMAAAL PTTFPKLK

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MNTSMNYNNK KASNDVVGGK TARACDNCVK KRARWYCASD DAFLCQACDH SVHSANSLAR  60
RHERVRLKTA SSSRSPPPLR LKPTSHESPS PTWHQGFTRK ARTPRHGRSR LGFTKPRGRS  120
STSSSTSSGT APNPFSLVPE FGGDETSQSH DENEEQLLYR VPIYDPFVAQ LCSSVPEMSK  180
TTSFGANDNN HNGTSPDEEN NSSNDNENLH GFLLPAHEMD DLAEFAADVE SLLGRGLEND  240
ECFGMEVLGF VDCKDGREKT TGSESRLGEG RVVKVEEDEE GEGEGEDMGS GGLADMMRET  300
FELNFDDYDE SPPSCGEEEV EEEKVGLKEM KNDKGNDLND VVKNSKAMMM TTMKKKKKKK  360
KKILLRLDYE AVSTAWASQG GSPWTTGDRP DFDPDACLPD CLSTCNAAQL RQHHHHHHYV  420
DMGVGVGGLM NAAILGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV  480
KRASFMAAAL PTTFPKLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	360	KKKKKKK
2	354	362	KKKKKKKKK
3	355	361	KKKKKKK
4	356	362	KKKKKKK
5	451	467	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-43	CO-like family protein