PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON77500.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 414aa    MW: 46491.8 Da    PI: 9.5576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON77500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-181054246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 i+n+  r++tf kR++g++KKA+E S+LCd++ ++ + +++  l
  PON77500.1 10 LIKNEKSRKTTFQKRKKGMMKKASEFSILCDIDMCLFVSGPKSDL 54
                59*************************************998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MGRGKLKLEL IKNEKSRKTT FQKRKKGMMK KASEFSILCD IDMCLFVSGP KSDLDLAITR  60
PGQKKSHDQE VVAAASEIET FPPESDRVLR IIQKYQKAVM QRPPNKSYNL AGLLAERNKK  120
VHSDISRFRK KFYGLKYPTS AELIDGLSAD ELEELVGRLD GRIDVVKKII VDKKKENALR  180
PIVKNNSHDD QQQQQLVSLS NNNNFSTNYS MVDMNEPPPP PQIDSSFSVF NPNFMMIKLV  240
GGDSNQASSS TSRFDDQHDQ FNYYFNGSSS NTTNSMHYGT DMTTLRGPVY DDHPMAGMMF  300
DGTNTTASTQ YSTVTTALRS YHDPTAGMSL EKRTMMFNGS GAAGTASSSM QTHGYYYRPP  360
LVQPMMVPYV QMQYPMNVMN VVPRLSSFHV ASSAPRVNEL TDVVNDFLKN KNIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-17M-type_MADS family protein