PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON77496.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 281aa    MW: 31733.4 Da    PI: 7.8567
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON77496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.5e-161154346
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                i+++  r +tf +R++g+ KKA+E S+LCd ev++ + +++  l
  PON77496.1 11 IKEEKSRLTTFQRRKKGLVKKASEFSILCDSEVCLFVSAPQSDL 54
                889999******************************99988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MGRGRVKLEL IKEEKSRLTT FQRRKKGLVK KASEFSILCD SEVCLFVSAP QSDLQVVAES  60
GIETFPPEID RVLGVIEKYK KAVMQRPPKC KSYHPTAPPL AKPNRNKYCD FNKYPTLSEL  120
VDGFSADELS ELVSRLDRKI EIVKKVIEGK KKENALDPMI MIRNDGAIHN HIDDQQLHDI  180
VDDGDSVSVK SHVGWKGRAE VMLDHQNMTS NNAQFRGQEC MMMLSGAATS ATSPNSLAHP  240
MMPYMQYHYP MNVGPSICSF QRGDDLTDVL NSFLYNNTNM Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-13MIKC_MADS family protein