PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON77488.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

M-type_MADS

Protein Properties

Length: 388aa MW: 43864.7 Da PI: 9.316

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON77488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.6	8e-19	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r++tf kR+ngi+KKA+E S+LCd++++v + +++ PON77488.1 11 IANEKSRKTTFQKRKNGIMKKAFEFSILCDTDICVFVSGPK 51 899*********************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGRGKLKLEL IANEKSRKTT FQKRKNGIMK KAFEFSILCD TDICVFVSGP KTDSGHAQTR 60 TLKEGKEEAD IETFPPENDR VLRIIQKYQQ AVMERPPNKS YNLTGLLAER NKKVHSDISR 120 FRKKFYAFKY PTSAELIDGL AADELAELVG RLDGKIRVVK QIIEGRKKKE SSLKNVFKNY 180 HDYYDQIVDM NRTPSLQTDS SFSVTNPNSM MSLLFGDDNQ TSMASSFDDH HDHHHHPRVK 240 SYFNGMSSNN TQQYGTNNIT SSFRGPVYDD LTAGVLPENT MHYSTVTPAS RRPVYNHPTA 300 RMALEKYMMM FNGSGAAGTA SSSMQTHGYY YPPPVVQPMM VPYVQMQYPM NAMNVGPSLD 360 SFQVASPASR GNELTDVVND FLENKIIV

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGRGKLKLEL IANEKSRKTT FQKRKNGIMK KAFEFSILCD TDICVFVSGP KTDSGHAQTR  60
TLKEGKEEAD IETFPPENDR VLRIIQKYQQ AVMERPPNKS YNLTGLLAER NKKVHSDISR  120
FRKKFYAFKY PTSAELIDGL AADELAELVG RLDGKIRVVK QIIEGRKKKE SSLKNVFKNY  180
HDYYDQIVDM NRTPSLQTDS SFSVTNPNSM MSLLFGDDNQ TSMASSFDDH HDHHHHPRVK  240
SYFNGMSSNN TQQYGTNNIT SSFRGPVYDD LTAGVLPENT MHYSTVTPAS RRPVYNHPTA  300
RMALEKYMMM FNGSGAAGTA SSSMQTHGYY YPPPVVQPMM VPYVQMQYPM NAMNVGPSLD  360
SFQVASPASR GNELTDVVND FLENKIIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-16	M-type_MADS family protein