PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON77271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21573.9 Da PI: 10.611 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva+iifs++ kly y+s PON77271.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALIIFSPSEKLYQYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 79.7 | 7.2e-27 | 83 | 172 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e +++e++ Lk+ +enL+ ++R+l GedL+ L +keL+qLe+qL+ +++++RskK +++ +i++l+++ ++lqeen++L+kk++ PON77271.1 83 RTRTIEFWKTEIEELKRSTENLEGNLRNLAGEDLSMLGMKELKQLERQLKIGVERVRSKKRRIISGHINYLKRRRRALQEENTRLQKKVK 172 456789*********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALIIFSP SEKLYQYASH 60 DMDRSIVRYR SEMGLPGSAD NERTRTIEFW KTEIEELKRS TENLEGNLRN LAGEDLSMLG 120 MKELKQLERQ LKIGVERVRS KKRRIISGHI NYLKRRRRAL QEENTRLQKK VKLLEQQDDT 180 NPTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 158 | KKRRIISGHINYLKRRRR |
2 | 141 | 172 | KKRRIISGHINYLKRRRRALQEENTRLQKKVK |
3 | 142 | 159 | KKRRIISGHINYLKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 4e-51 | MIKC_MADS family protein |