PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON76825.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 346aa MW: 39449.5 Da PI: 7.8539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON76825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ PON76825.1 182 FACSICNKTFNRYNNMQMHM 201 78*****************9 PP
2	zf-C2H2	17.2	1.5e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ PON76825.1 266 FVCRKCGKTFAVKGDWRTHEKNC 288 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGLWNHHLQD NNLFFQAPTF IEWLKPTSPS PPSPPSSTSS YSSSLSNTTQ QELVPQNSTS 60 TTTTSIQCLP LLSRFDETKS MKVEHFGVQK EDFGIKEEKI ERVTVSLHIG LPNTTGTVDS 120 AGYSDDHDDK IEVVDHLKEE EEEEHEVPMK KHKSFQYGCS FNMESRFWIP TPAQILVGPM 180 QFACSICNKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN 240 HPRAKPLKDF RTLQTHYKRK HGVKPFVCRK CGKTFAVKGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI RSFGKGHSPH PSLEGFDHDE KECVTAGSED EEFVRA

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGLWNHHLQD NNLFFQAPTF IEWLKPTSPS PPSPPSSTSS YSSSLSNTTQ QELVPQNSTS  60
TTTTSIQCLP LLSRFDETKS MKVEHFGVQK EDFGIKEEKI ERVTVSLHIG LPNTTGTVDS  120
AGYSDDHDDK IEVVDHLKEE EEEEHEVPMK KHKSFQYGCS FNMESRFWIP TPAQILVGPM  180
QFACSICNKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN  240
HPRAKPLKDF RTLQTHYKRK HGVKPFVCRK CGKTFAVKGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI RSFGKGHSPH PSLEGFDHDE KECVTAGSED EEFVRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-116	C2H2 family protein