PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON76224.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

Trihelix

Protein Properties

Length: 660aa MW: 72359.5 Da PI: 5.4309

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON76224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.3	9.9e-29	42	126	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k+ikeg+ ++ ++ +t+++fdqlea PON76224.1 42 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVFKYHKRIKEGRTGK--PDGKTYRFFDQLEA 126 8******************************************************************95..77779*****85 PP
2	trihelix	107.2	1.1e-33	475	560	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evl+Li++r++++ +++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a PON76224.1 475 RWPKAEVLTLIKLRTNLDAKYQENGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 560 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MLGDSSSTGL GSSSGGDAAA AAAVGGGEDF LTGTDRSFGG NRWPRQETLA LLKIRSDMDV 60 AFRDASVKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVFK YHKRIKEGRT GKPDGKTYRF 120 FDQLEALENQ LFSTTTSSPP PPPPATAAAQ PKAQAQALAM QAVAVVTTTT AAMANTNSNP 180 LLPQNSTVPS ISTTTIPSQA TIMNLALQSS FQAAPTNPTV LPVPPQPLAA VPLATTATNP 240 TFSSAAAAAE LRSISADLAS NSMTTSSMSS DEEMGEEESG GGGRRKRKRK WKDFFERLMK 300 EVIQRQEEQQ KKFLEAVEKR EHERMVREEA WRMQEMSRIN REREILAQER SIAAVKDAAV 360 MSFLQKISEQ QNQNPEAAAA AAAAANINIP QPTPIIQPVQ STPPPPQPQP STAAAAAAPP 420 PLPPRAVQPV IQNIENVLKS GHNTNNNNNG SNSNSNNNNN NTNNNFMAGS ASSSRWPKAE 480 VLTLIKLRTN LDAKYQENGP KGPLWEEISA AMRKLGYNRN AKRCKEKWEN INKYFKKVKE 540 SNKKRPEDSK TCPYFHQLDA LYREKNKYFD PAAVGQFAKP ENSVPLMVQP EQQWPPAAVA 600 PPSGDRSRAV EMERLDQMDH DEDEEEDEEE DEDDDEEDEE GGNNYELVAN KPASTVNAAE

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MLGDSSSTGL GSSSGGDAAA AAAVGGGEDF LTGTDRSFGG NRWPRQETLA LLKIRSDMDV  60
AFRDASVKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVFK YHKRIKEGRT GKPDGKTYRF  120
FDQLEALENQ LFSTTTSSPP PPPPATAAAQ PKAQAQALAM QAVAVVTTTT AAMANTNSNP  180
LLPQNSTVPS ISTTTIPSQA TIMNLALQSS FQAAPTNPTV LPVPPQPLAA VPLATTATNP  240
TFSSAAAAAE LRSISADLAS NSMTTSSMSS DEEMGEEESG GGGRRKRKRK WKDFFERLMK  300
EVIQRQEEQQ KKFLEAVEKR EHERMVREEA WRMQEMSRIN REREILAQER SIAAVKDAAV  360
MSFLQKISEQ QNQNPEAAAA AAAAANINIP QPTPIIQPVQ STPPPPQPQP STAAAAAAPP  420
PLPPRAVQPV IQNIENVLKS GHNTNNNNNG SNSNSNNNNN NTNNNFMAGS ASSSRWPKAE  480
VLTLIKLRTN LDAKYQENGP KGPLWEEISA AMRKLGYNRN AKRCKEKWEN INKYFKKVKE  540
SNKKRPEDSK TCPYFHQLDA LYREKNKYFD PAAVGQFAKP ENSVPLMVQP EQQWPPAAVA  600
PPSGDRSRAV EMERLDQMDH DEDEEEDEEE DEDDDEEDEE GGNNYELVAN KPASTVNAAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	289	RRKRKR
2	284	290	RRKRKRK
3	285	290	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-65	Trihelix family protein