PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON73869.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

Trihelix

Protein Properties

Length: 701aa MW: 79702.1 Da PI: 6.7282

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON73869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.4e-15	131	201	2	76
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg.ekkrtsess 76 W+++evlaL+++r++m++++ + We+vs+k++e gf+rs+++Ckek+e+ + ++ + +++ ++++ +++ PON73869.1 131 WSNNEVLALLRVRSNMDNWFPDF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESSYFDNNNNNhNINNYCTNN 201 ******************998.....9*****************************8876540444445554 PP
2	trihelix	91.3	9.8e-29	508	603	1	86
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r +e l +++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql PON73869.1 508 RWPRDEVLALINLRCslyssgdqpdhHKEGILASSSVKAPLWERISQGMFELGYKRSAKRCKEKWENINKYFRKTKHVNKKR-SVDSRTCPYFHQLS 603 8************666666655555555555667*****************************************8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MFNGGVPDQL HQFIASSRPN SVVLPLSSSS SSSYPNSIDI HANYTHESHQ LLPLQPHFLH 60 PLLHQVHHKD ISHHDEHHKE EDATATAAAA VAAAAAANNL VSDVGLDMME SPRSIPELIP 120 TVDLHHHHHP WSNNEVLALL RVRSNMDNWF PDFTWEHVSR KLAELGFKRS AEKCKEKFEE 180 ESSYFDNNNN NHNINNYCTN NYRPLHHHQL SELEQLYHGE NQAQHRQNHN TMGAQKDQRV 240 AENPSELDER RGQSLEEVDL DSTRNETVVL VGGISTKDSD EAEKVVEVSK SGNNINKKRK 300 RSSSSHENKK MKFDMFKGFC EEIVKKMMAQ QEEMHDKLLE NMVKRDQEKV AKEEAWKKQE 360 MDRMNKEVEI MAHEQAMAGD RQASIIDFLN KFTSNSADQT PKPKSTGKDI SLTSSSSSSF 420 VLQVQPHDHQ QSPIITPTIS HLEKIQTTKD NDNINTHDQQ PSSSSQNPST TCNIVSTPPA 480 KQPPATSSSN KTQNPIPINN DKEDLGKRWP RDEVLALINL RCSLYSSGDQ PDHHKEGILA 540 SSSVKAPLWE RISQGMFELG YKRSAKRCKE KWENINKYFR KTKHVNKKRS VDSRTCPYFH 600 QLSTLYNKGT TLVSSSHPHQ QGQEISDHNI SAMFPPETSQ LIIRSDHPVL HDNDDDHHDH 660 HNHDSSSHVV HVADQGERSG NNVIVRNHHQ EVVPAGFDFE F

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MFNGGVPDQL HQFIASSRPN SVVLPLSSSS SSSYPNSIDI HANYTHESHQ LLPLQPHFLH  60
PLLHQVHHKD ISHHDEHHKE EDATATAAAA VAAAAAANNL VSDVGLDMME SPRSIPELIP  120
TVDLHHHHHP WSNNEVLALL RVRSNMDNWF PDFTWEHVSR KLAELGFKRS AEKCKEKFEE  180
ESSYFDNNNN NHNINNYCTN NYRPLHHHQL SELEQLYHGE NQAQHRQNHN TMGAQKDQRV  240
AENPSELDER RGQSLEEVDL DSTRNETVVL VGGISTKDSD EAEKVVEVSK SGNNINKKRK  300
RSSSSHENKK MKFDMFKGFC EEIVKKMMAQ QEEMHDKLLE NMVKRDQEKV AKEEAWKKQE  360
MDRMNKEVEI MAHEQAMAGD RQASIIDFLN KFTSNSADQT PKPKSTGKDI SLTSSSSSSF  420
VLQVQPHDHQ QSPIITPTIS HLEKIQTTKD NDNINTHDQQ PSSSSQNPST TCNIVSTPPA  480
KQPPATSSSN KTQNPIPINN DKEDLGKRWP RDEVLALINL RCSLYSSGDQ PDHHKEGILA  540
SSSVKAPLWE RISQGMFELG YKRSAKRCKE KWENINKYFR KTKHVNKKRS VDSRTCPYFH  600
QLSTLYNKGT TLVSSSHPHQ QGQEISDHNI SAMFPPETSQ LIIRSDHPVL HDNDDDHHDH  660
HNHDSSSHVV HVADQGERSG NNVIVRNHHQ EVVPAGFDFE F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	3e-83	Trihelix family protein