PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON72693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 22612.7 Da PI: 9.6939 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.6 | 2.5e-21 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ rqvtfskRr+g++KKA+EL +LC++ev v++fs+ gk y + PON72693.1 10 MVKDSNCRQVTFSKRRTGLFKKANELATLCGTEVGVVVFSPGGKPYSF 57 5788999************************************98887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence |
MGRRKIEIKM VKDSNCRQVT FSKRRTGLFK KANELATLCG TEVGVVVFSP GGKPYSFGQP 60 NVESIADRFL NQDQRKTTTT TNASSSSKRR SKSEAAALEK LNQQLNDCMN QLNDEKLRGE 120 ALDKGVADAK GLFLGGNNES KSIQELGKTE LEKLKEALEE LRERVKERAG EMEASSTLLM 180 LSNAIEPPPK LEDDYVKTKV AKNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-36 | M-type_MADS family protein |