PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON71538.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 31135.9 Da    PI: 8.901
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON71538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-283484151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ien++nrqvt+skRrngi+KKA EL vLCda+v++i++ss++k++ey+s
  PON71538.1 34 KLIENQTNRQVTYSKRRNGIFKKARELTVLCDAKVSLIMISSNNKIHEYAS 84
                569**********************************************86 PP
2K-box81.61.8e-2796194199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yq+++g +l+++++e++qq +++Lk+++ +L+re+R++lG dL++L++ eL+ Le+ + +s + iR++K++ +++q+++++kk k+l+e+n++L +k+ 
  PON71538.1  96 YQTTTGIDLWKTQYETMQQTFEQLKERNYKLRREIRQRLGLDLSDLDFSELKALEDSMASSSEAIRERKMQKIKTQTDTTKKKVKSLEERNTSLVHKIH 194
                 78999999****************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MSNYKSEWSV EEEETDHHHQ DTKQKMGRGK IQIKLIENQT NRQVTYSKRR NGIFKKAREL  60
TVLCDAKVSL IMISSNNKIH EYASPGSCTK DMIDMYQTTT GIDLWKTQYE TMQQTFEQLK  120
ERNYKLRREI RQRLGLDLSD LDFSELKALE DSMASSSEAI RERKMQKIKT QTDTTKKKVK  180
SLEERNTSLV HKIHAKYEDP PYGLVEDDGG YESAVALAGA SNLYSFRHRH HHQSSHSALH  240
SGGGSIITTS HSALHNGGGS YDSLDLRDLR LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-68MIKC_MADS family protein