PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON70398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 354aa MW: 40263.5 Da PI: 6.5748 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.2 | 1.7e-12 | 21 | 78 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g+ PON70398.1 21 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 78 57*******************99998898888888********************997 PP | |||||||
2 | AP2 | 51.3 | 3e-16 | 120 | 171 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PON70398.1 120 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 171 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence |
VQKVKRTRRS VPRDSPPQRS SIYRGVTRHR WTGRYEAHLW DKNCWNESQN KKGRQGAYDD 60 EEAAAHAYDL AALKYWGHET ILNFPLSTYE KELKDMEGVA REEYIGSLRR KSSGFSRGVS 120 KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT AYDMAAIEYR GLNAVTNFDL 180 SRYIKWLKPN TSTPTYNNIN GNFSITNPIN TEANVPQNLN QDDHDQLGLG NFFHDVQHIT 240 SNVEGETLFS PSQQPRPATA TSALGLLLQS SKFKEMMEMT SAGADCPLSS PSPPLLPELT 300 DHEPMRFAFS DDVSTYFDDH QCQDHSSSLA YGNDSIFSEL NSFMQPMFPC DFDT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G16060.1 | 6e-89 | AP2 family protein |